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8 protocols using aprotinin

1

Protein Extraction and Western Blot Analysis

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Protein extraction was performed using the RIPA reagent (Beyotime, Shanghai, People’s Republic of China) supplemented with 100 μg/mL PMSF (Beyotime, Shanghai, People’s Republic of China) and 2 μg/mL aprotinin (Beyotime, Shanghai, People’s Republic of China). Proteins were separated by 10% SDS-polyacrylamide gel and transferred to a polyvinylidene difluoride (PVDF) membrane. Five percent skim milk was used to block the membrane for 2 hrs, and the following specific primary antibodies were added to the membrane and incubated overnight at 4°C: PDK1 (Abcam), AKT (Cell Signalling Technology), p-AKT (Cell Signaling Technology) and GAPDH (CST, 2118). After washing, HRP-conjugated anti-rabbit IgG (1:2000) was used to incubate the membrane for 2 hrs at room temperature and followed by washing 3 times with TBST buffer. An enhanced chemiluminescence (ECL) system (Pierce Biotechnology, Rockford, USA) was used to detect the bound antibodies. GAPDH was used as a loading control.
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2

Western Blot Analysis of Signaling Proteins

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Cell lysis was performed using the RIPA reagent (Beyotime, Shanghai, China) supplemented with 100 μg/mL PMSF (Beyotime, Shanghai, China) and 2 μg/mL aprotinin (Beyotime, Shanghai, China). The proteins in the lysate were separated by 10% SDS–polyacrylamide gel and transferred to a polyvinylidene difluoride (PVDF) membrane. Membranes were then blocked with 5% skim milk powder for 2 h at room temperature, the membranes were then incubated overnight at 4°C using the following specific primary antibodies: PDK-1 (1:1000, Cell Signalling Technology), Cyclin D1 (1:500, Santa Cruz), Cyclin A2 (1:500, Santa Cruz), Caspase-3 (1:1000, CST), MMP-3 (1:500, Santa Cruz), MMP-9 (1:500, Santa Cruz), MMP-13 (1:500, Santa Cruz) and GAPDH (1:1000, CST, 2118). Following this, HRP-conjugated anti-rabbit IgG (1: 2000, CST) was added to the membrane and incubated for 2 h at room temperature. After washing with TBST buffer for three times, bound secondary antibodies were detected by an enhanced chemiluminescence (ECL) system (Pierce Biotechnology, Rockford, USA). GAPDH was used as an internal control.
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3

Histological and Biochemical Analyses of Reproductive Tissue

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After behavioral experiments, all animals were euthanized with chloral hydrate (350 mg/kg) during the estrus phase. To measure histology analysis, we performed hematoxylin and eosin (H&E) and Masson's trichrome staining and the clitoral and vaginal tissues were either fixed in 10% buffered formalin or snap frozen in liquid nitrogen. Blood was collected by cardiac puncture. Serum was extracted from the blood samples. To perform enzyme-linked immunosorbent assay (ELISA), tissue homogenates were prepared in ice-cold buffer containing 50 mM Tris and 150 mM NaCl (pH 8.0) and supplemented with 1 mM EDTA, 0.1 mM phenylmethanesulfonyl fluoride, and 1 μg/mL each of aprotinin, leupeptin, and pepstatin (Beyotime Biotech, Shanghai, China) using a homogenizer (OSE-Y50; TIANGEN, Beijing, China), followed by centrifugation at 11,000 g for 15 minutes at 4°C.
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4

Western Blot Analysis of Chondrogenic Markers

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Cells were extracted with cell lysis buffer [50 mM Tris (pH 7.6), 150 mM NaCl, 1% TritonX-100, 1% deoxycholate, 0.1% SDS, 1 mM PMSF, and 0.2% Aprotinin (Beyotime)]. After measuring protein concentration by BCA protein assay (Beyotime), equal protein amounts were mixed with 5×sample buffer (Beyotime) and boiled. These samples were resolved on 10% SDS-PAGE (sodium dodecyl sulfate polyacrylamide gel electrophoresis) and transferred onto PVDF (polyvinylidene fluoride) membrane by using semi-dry transfer method. After blocking in 10% nonfat dry milk in TBST (tris-buffered saline tween-20) for 2 h, blots were incubated with primary antibodies including Col II (rabbit polyclonal 1:500, Abcam), Sox9 (rabbit polyclonal 1:500, Abcam), Runx2 (rabbit polyclonal 1:500, Abcam), Col X (rabbit polyclonal 1:500, Abcam) and GAPDH (rabbit polyclonal 1:1,000, Abcam) at 4℃ overnight. After washing with TBST three times, blots were incubated with goat anti-rabbit secondary antibody (1:2,000, ZSGB-BIO) at room temperature for 1 h. GAPDH was used as loading control.
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5

Western Blot Analysis of Chondrocyte Markers

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The cells were extracted with lysis buffer containing 50 mM Tris (pH 7.6), 150 mM NaCl, 1% Triton X-100, 1% deoxycholate, 0.1% SDS, 1 mM PMSF and 0.2% Aprotinin (Beyotime). After we measured the protein concentration, the equal protein samples were mixed with 5X sample buffer (Beyotime) and boiled. The proteins (30 µg) were resolved by 10% SDS-PAGE gel and transferred on PVDF membrane (Millipore, Hong Kong, China) by using the semi-dry transfer method. After blocking in 10% nonfat dried milk in TBST for 2 h, the blots were incubated with primary antibodies including HDAC4 (rabbit polyclonal 1:500, ab12172), p38 (rabbit polyclonal 1:500, ab27986), Runx2 (rabbit polyclonal 1:500, ab23981), Col10a1 (rabbit polyclonal 1:500, ab58632) (all from Abcam), p-p38 (rabbit polyclonal 1:500, bs-50486R), Mmp13 (rabbit polyclonal 1:500, bs-0575R) (both from Bioss) and GAPDH (rabbit polyclonal 1:1,000, ab37168; Abcam) at 4°C overnight. After washing by TBST, the blots were incubated with a horseradish peroxidase-conjugated secondary antibody (diluted 1:2,000, sc-2374; Santa Cruz Biotechnology) at room temperature for 1 h. Blots against GAPDH served as loading control.
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6

Quantitative Analysis of p53 Protein

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p53 protein expression was assessed by western blotting. The cells were lysed in radioimmunoprecipitation assay buffer containing 150 mM NaCl, 50 mM Tris-Cl (pH 7.6), 5 mM EDTA, 0.5% NP-40, 0.5% Triton X-100 containing 10 µg/ml each of leupeptin, aprotinin, and antipain, 1 mM sodium orthovanadate and 0.5 mM phenylmethanesulfonyl fluoride (all Beyotime Institute of Biotechnology, Shanghai, China). The protein concentration was determined using the bicinchoninic acid assay (Thermo Fisher Scientific, Inc.). Total protein (50 µg) was loaded onto each lane, separated by 10% SDS-PAGE and transferred to a polyvinylidene difluoride membrane (EMD Millipore, Billerica, MA, USA). After being blocked with 5% skimmed milk in Tris-buffered saline (pH 7.6; Beyotime Institute of Biotechnology) at room temperature, the membrane was incubated at 4°C overnight with rabbit anti-p53 (1:1,000) and anti-β-actin (1:1,000) primary antibodies. Following incubation with HRP-conjugated goat anti-rabbit secondary antibody (1:5,000), the immune complexes were detected by enhanced chemiluminescence western blotting reagents (Beyotime Institute of Biotechnology). Data were normalized to β-actin protein expression levels and relative protein expression levels were determined using AlphaView Stand Alone Analysis Software 3.0 (ProteinSimple, San Jose, CA, USA).
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7

Analyzing Cellular Proteins by Western Blot

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Total protein of cells was extracted from RIPA buffer (Beyotime, Shanghai, China) containing 100 μg/ml PMSF (Beyotime, Shanghai, China) and 2 μg/ml aprotinin (Beyotime, Shanghai, China). Protein lysates were separated by 10% SDS-PAGE and transferred to the PVDF membrane. After that, the membrane was blocked by 5% BSA for 2 h and then incubated with primary antibodies and secondary antibody. Primary antibodies used in Western blotting were LIMD1 (Cell Signaling Technology, 13245), Ki67 (Abcam, ab92742), and GAPDH (Cell Signaling Technology, 5174).
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8

Investigating Colonic Protein Expression

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The proteins from colonic tissues and RAW 264.7 cells were extracted using RIPA buffer (Beyotime) and protease inhibitor cocktail (200 mM AEBSF, 30 μM aprotinin, 13 mM bestatin, 1.4 mM E64, and 1 mM leupeptin in DMSO, 1:100) (Beyotime). Protein was then extracted following centrifugation. A BCA kit (Beyotime) was used to determine protein concentration. Subsequently, polyacrylamide gel electrophoresis (Bio-Rad) was conducted. The resulting membranes were replaced with polyvinylidene difluoride (Millipore, Billerica, MA, USA) before being submerged for 2 h in blocking solution. Primary antibodies against ZO-1 (1:1000), occludin (1:1000), cyclo-oxygenase (COX)-2 (1:1000), inducible NO synthase (iNOS) (1:1000), ERK 1/2 (1:1000), phospho (p)-ERK 1/2 (1:2000), nuclear factor (NF)-κB p65 (1:1000), p-NF-κB p65 (1:1000), β-actin (1:1000), and GAPDH (1:1000) (Cell Signaling Technology, China) solution were added to the membranes which were stored overnight at 4 °C. On the next day, the membranes were washed, and a secondary antibody was added for 1 h at room temperature. The secondary antibody was then washed away, and chemiluminescence was measured (ECL Plus; Beyotime). Data were collected and analyzed from three independent samples.
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