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13 protocols using ecl reagent

1

Neuroinflammation and BBB Dysfunction

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Rotenone (#R8875) and Evans blue (#E2129) were provided by Sigma-Aldrich, Inc. (St. Louis, MO, USA). The AG RNAex Pro Reagent (#AG21102), Pro Taq HS qPCR Kit, and SYBR Green Premix (#AG11720) were provided by Accurate Biotechnology (Hunan, China). The PLX3397 (#S7818), minocycline (#S4226), and SB-3CT (#S7430) were provided by Selleck (Shanghai, China). Antibodies against tyrosine hydroxylase (TH, #AB152) and ionized calcium binding adaptor molecule-1 (Iba-1, #019-19741) antibodies were provided by EMD Millipore (Temecula, CA, USA) and Wako Chemicals (Richmond, VA, USA), respectively. Antibodies against fibrinogen (#ab34269), zonula occludens-1 (ZO-1, #ab96587), claudin-5 (#ab131259), occludin (#ab167161), MMP-2 (#ab92536), MMP-9 (#ab38898), GAPDH (#ab181602), and the MMP assay kit (#ab112146) were purchased from Abcam (Cambridge, MA, USA). The ECL reagents (#20-500-120) were provided by Biological Industries (Cromwell, CT, USA).
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2

Western Blotting Analysis of Brain Samples

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For Western blot, mice were perfused transcardially with PBS to remove blood. The brains were collected and different brain regions were dissected on ice. All the samples were stored at −80 °C. The brainstem samples were homogenized in cold RIPA lysis buffer containing proteinase and phosphatase inhibitors.28 (link),36 (link) Equivalent amounts of protein from each group were added to a 4–12% Bis-Tris-polyacrylamide electrophoresis gel. Then, the proteins were transferred to polyvinylidene fluoride (PVDF) membranes. We blocked the membranes with 5% skim milk and then incubated them with primary antibodies against TH (1:1000, ab129991, Abcam, Cambridge, MA, USA), Iba-1 (1:1000, 019–19,741, Abcam, Cambridge, MA, USA), CR3 (1:1000, ab128797, Abcam, Cambridge, MA, USA) or GAPDH (1:5000, ab181602, Abcam, Cambridge, MA, USA) at 4 °C overnight. The membranes were then washed three times with PBST and incubated with horseradish peroxidase-linked anti-rabbit IgG (1:3000) antibody at room temperature for 2 h. The blot signals were detected by ECL reagents (Biological Industries, Cromwell, CT, USA). The densitometry of blots was quantified based on previous report.46 (link) GAPDH was used as an internal control for each blotting. All blots were normalized to GAPDH. Fold changes for each treatment were normalized and are shown as percentages of the control.
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3

Neuronal Protein Expression Analysis

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Equal amounts of protein were separated by 4–12% Bis-Tris-polyacrylamide electrophoresis gel and transferred to polyvinylidene difluoride membranes. The membranes were incubated with primary antibody Neu-N, PSD-95, tyrosine hydroxylase (TH, EMD Millipore, Temecula, CA, USA), α-synuclein, signal transducers (Abcam, Cambridge, MA,USA) and activators of transcription 1 (STAT1), p-p65, p65, p-IκBα and IκBα (Cell Signaling Technology, Danvers, MA, USA) overnight at 4 °C and followed by horseradish peroxidase-linked anti-rabbit IgG (1:3000) for 2 h at 25 °C. ECL reagents (Biological Industries, Cromwell, CT, USA) were used as a detection system.
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4

Western Blot Analysis of Protein Expression

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Samples were lysed on ice in RIPA lysis buffer (Beyotime Institute of Biotechnology, Nanjing, China) for 1 h and then centrifuged at 12,000× g at 4 °C for 10 min. The supernatant was obtained and stored at −20 °C. Protein concentrations were determined with a BCA protein assay kit (Beyotime Institute of Biotechnology, Nanjing, China). Samples were added in 5× loading buffer and boiled for 10 min for denaturation. Fifty micrograms of the total protein in each sample was separated on a 10% SDS-polyacrylamide gel and then transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were blocked with 5% non-fat milk in TBST at room temperature for 2 h and then incubated overnight with the corresponding primary antibodies at 4 °C. The membranes were washed three times with TBST, and then incubated with horseradish peroxidase-conjugated secondary antibodies at room temperature for 2 h. Protein blots were detected using enhanced chemiluminescence (ECL) reagents (Biological Industries, Beit HaEmek, Israel).
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5

Western Blot Analysis of Oxidative Stress Markers

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Total cytosolic and plasma membrane proteins were prepared as described previously27 (link). Equal amounts of protein were separated by 4–12% b-tris-polyacrylamide electrophoresis gel and transferred to polyvinylidene difluoride membranes. The membranes were incubated with primary antibody against 4-hydroxy-2-nonenal (4-HNE), αM, phospho-ERK1/2, ERK1/2, phospho-Src, Src (Cell Signaling Technology, Danvers, MA, USA), p47phox (1:1,000; EMD Millipore, Temecula, CA, USA), gp91phox (1:1,000; BD Transduction Laboratories, San Jose, CA, USA), and GAPDH (1:1000, Abcam, Cambridge, MA, USA) overnight at 4 °C and followed by horseradish peroxidase-linked anti-rabbit IgG (1:3000) for 2 h at 25 °C. ECL reagents (Biological Industries, Cromwell, CT, USA) were used as a detection system.
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6

Western Blot Analysis of Immune Markers

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For western blot analysis, equal amounts of protein were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) on 4% stacking and 10% resolving gel. Following electrophoresis, the proteins were transferred to polyvinylidene difluoride membranes. The membranes were blocked with 5% non-fat milk and incubated with primary antibodies (1:1000) against Iba-1, GFAP, phospho-STAT1, STAT1, phospho-STAT3, STAT3 (Cell Signaling Technology, Danvers, MA, USA), GAPDH (Abcam, Cambridge, MA, USA) and HRP-linked anti-rabbit or mouse IgG (1:3000) for 2 h. ECL reagents (Biological Industries, Cromwell, CT, USA) were used as detection system.
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7

Protein Expression Analysis in Ischemic Cortex

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Mice were sacrificed after anesthesia and the peri-infarct cortical tissue was harvested for analysis. Samples were lyzed on ice with protein extraction reagents (Beyotime Institute of Biotechnology, Shanghai, China) for 1 h, and then centrifuged at 12,000 rpm at 4°C for 10 min. The supernatant was then removed and stored at −20°C. Protein concentrations were quantified by the Bradford protein assay kit (Bio-Rad, California, United States). Samples were added in 5 × loading buffer and boiled for 10 min for denaturation. Forty micrograms of the total protein in each sample was then separated on 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels, and then transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were blocked with 5% non-fat milk in tris buffered saline with Tween 20 (TBST) at room temperature for 90 min and then incubated with the primary antibodies against VEGF, p-eNOS, eNOS, MMP9, MMP2, p-AMPK, AMPK, and β-actin, at 4°C overnight. The membranes were washed three times with TBST, and then incubated with horseradish peroxidase-conjugated secondary antibodies at room temperature for 1 h. The protein blots were detected by enhanced chemiluminescence (ECL) reagents (Biological Industries, Beit Hemek, Israel).
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8

Western Blot Analysis of Protein Samples

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Samples were subjected to SDS-PAGE and transferred to nitrocellulose membranes (pore size, 0.45 µm; Bio-Rad) or polyvinylidene difluoride (PVDF) (Mercury; Millipore). The blots were blocked for 1 h in 5% (wt/vol) skim milk-PBST (0.1% Tween in phosphate-buffered saline), incubated with the primary antibody (diluted in 5% skim milk-PBST for 1 h at room temperature, unless indicated otherwise) and then with the secondary antibody (diluted in 5% skim milk-PBST for 1 h at room temperature), and detected with the enhanced chemiluminescence (ECL) reagents (Biological Industries). The following primary antibodies were used: mouse anti-HA (Abcam), diluted 1:1,000; rabbit anti-MBP (Thermo Fisher Scientific), diluted 1:1,000; mouse anti-DnaK (Abcam); rabbit anti-intimin, diluted 1:2,000; mouse anti-JNK (BD Pharmingen), diluted 1:1,000 in Tris-buffered saline (TBS); and mouse anti-actin (MPBio), diluted 1:10,000. The following secondary antibodies were used: horseradish peroxidase-conjugated goat anti-mouse antibody (Abcam), diluted 1:5,000, and horseradish peroxidase-conjugated goat anti-rabbit antibody (Abcam), diluted 1:5,000.
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9

Molecular Mechanisms of Neurodegeneration

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Paraquat, glybenclamide, maneb, phorbol myristate acetate (PMA) 3,3′-diaminobenzidine (DAB) were provided by Sigma-Aldrich, Inc (St. Louis, MO, USA). The AG RNAex Pro Reagent, Pro Taq HS qPCR Kit and SYBR Green Premix were provided by Accurate Biotechnology (Hunan, China). The RGD peptide was provided by Selleck (Shanghai, China). The antibodies against Neu-N, postsynaptic density protein 95 (PSD-95) and tyrosine hydroxylase (TH) were provided by EMD Millipore (Temecula, CA, USA). The antibodies against NLRP3, Mac1, total and phosphorylated (Ser129) α-synuclein were provided by Abcam (Cambridge, MA, USA). Cell Signaling Technology (MA, USA) provides antibodies against caspase-1, and interleukin-1β (IL-1β), p–p38, p38, p-JNK, JNK, p-ERK, ERK, p-P21-activated kinase 1 (PAK1) and PAK1. GenePharma (Shanghai, China) provides NOX1 and NOX2-specific siRNAs. Biological Industries (Cromwell, CT, USA) provides the ECL reagents.
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10

Western Blot Protein Detection

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Proteins were separated by 12% SDS–polyacrylamide gel electrophoresis and transferred to a polyvinylidene difluoride membrane. The membrane was blocked (5% (w/v) milk in PBS, 1 h, room temperature (RT)), incubated with primary antibody (overnight, 4 °C), washed (0.1% (v/v) Tween-20 in PBS, ×3), incubated with secondary antibody (1 h, RT), and washed (as above). Finally, the membrane was treated with an ECL reagent (Biological Industries) and observed under chemiluminescence (ImageQuant LAS 4000, Fuji). Uncropped western blots for all main figures are presented in the Supplementary Information. We indicate where reblotting took place.
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