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3 protocols using secondary antibody conjugated to fitc

1

Assessing DNA Damage in UW228 Cells

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UW228 cells were treated with 0.5 μM 4-OHT for 24, 48 and 72 h. DNA double strand breaks (DSBs) were assessed by neutral single-cell microgel electrophoresis (comet assay) as described elsewhere [41 (link)]. The percentage of tail DNA was used as a parameter of DNA damage. Micronuclei production was assayed using a BD Gentest Micronucleus Assay Kit following the manufacturer's protocol (BD Biosciences, Poland) [42 (link)]. 53BP1 foci were revealed using immunostaining protocol as described elsewhere [42 (link)]. Briefly, fixed cells were incubated with the primary antibody anti-53BP1 (1:500, Novus Biologicals, Warsaw, Poland) and the secondary antibody conjugated to FITC (1:1000, Thermo Fisher Scientific, Warsaw, Poland). DNA was visualized using Hoechst 33342 staining. Digital cell images were captured with an In Cell Analyzer 2000 (GE Healthcare, UK) equipped with a high performance CCD camera. 53BP1 foci per nucleus were scored in 200 nuclei.
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2

Investigating HIV Infection in U87-CD4-CCR5 Cells

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U87-CD4-CCR5 cells, HIVADA, and HIV-1 p24 antibody were obtained from NIH AIDS Reagent program (Germantown, MD, United States). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), penicillin/streptomycin, trypsin-EDTA, secondary antibody conjugated to FITC, and prolong gold anti-fade reagent with DAPI were purchased from Thermo Fisher Scientific (Waltham, MA, United States). The in situ cell death detection kit, TUNEL was purchased from Roche (Mannheim, Germany). BAPTA-AM, 18α-glycyrrhetinic acid (AGA), and isoflurane were procured from Sigma–Aldrich (St. Louis, MO, United States). Xestospongin C (XeC) was purchased from Tocris (Bristol, United Kingdom). Cx43 blocking peptide and scrambled (Scr) peptide were obtained from PeproTech (Rocky Hill, NJ, United States).
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3

Quantifying Oxidative Stress Markers

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Intracellular reactive oxygen species (ROS) and superoxide production were measured using 2′,7′-dichlorodihydrofluorescein diacetate (H2DCF-DA) and dihydroethidium, respectively, as described elsewhere [72 (link)]. Oxidative DNA damage as a level of 8-hydroxy-2′-deoxyguanosine (8-OHdG, 8-oxo-dG) was measured using Epigentek EpiQuik 8-OHdG DNA Damage Quantification Direct Kit (Gentaur, Poland) as previously described [52 (link)]. Nuclear protein carbonylation was evaluated using nucleus and DNP co-staining. Protein derivatization was conducted according to [81 (link)]. Fixed and derivatized cells were incubated with the primary antibody anti-DNP (1:200) (Abcam) and the secondary antibody conjugated to FITC (1:1000) (Thermo Fisher Scientific). DNA was visualized using DAPI staining. Digital cell images were captured with an Olympus BX61 fluorescence microscope equipped with a DP72 CCD camera and Olympus CellF software. To analyze the level of nuclear protein carbonylation, ImageJ software http://rsbweb.nih.gov/ij/ was used. Briefly, the integrated fluorescence density (green channel) that is the sum of all pixel values within the marked area of each nucleus analyzed and equivalent to the product of the area and mean gray value was evaluated. The integrated fluorescence density is presented in relative fluorescence units (RFUs).
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