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6 protocols using cytomics fc 500 instrument

1

Cell Cycle Analysis and Apoptosis Assay Protocol

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For cell cycle analysis, cells were fixed with 70% alcohol at 4°C overnight. Then, RNase A (20 mg/mL final concentration) was used to degrade the RNA at 37°C for 20 minutes. Propidium iodide (PI) solution (10 μg/mL) (Sigma-Aldrich, St. Louis, MO, USA) was used to stain the cellular DNA for 10 minutes in the dark. Cells were analyzed with a Cytomics FC 500 instrument (Beckman Coulter, Brea, CA, USA). For apoptosis assays, 1 × 106 cells were used for apoptotic staining using the PE-Annexin V Apoptosis Detection Kit (BD Biosciences, Franklin Lakes, NJ, USA). After being washed twice with cold PBS, cells were harvested by trypsinization and incubated with 5 μL of PE Annexin V and 5 μL of PI solution for 15 minutes at room temperature. Cells were analyzed with a Cytomics FC 500 instrument (Beckman Coulter). Flow cytometry data were analyzed using FlowJo 7.6.1 software.
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2

Isolation and Characterization of Immune Cells

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Kidney, liver, and spleen specimens were filtered through a stainless-steel mesh and dissolved. Kidney MNCs were thereafter isolated using a Percoll density gradient (67% and 33%) centrifugation. Liver MNCs were isolated without collagenase, essentially as previously described10 (link).
For the identification of whole NKT or iNKT cells, the MNCs were stained with anti-TCR αβ Ab (H57-597, eBioscience, San Diego, CA) and either anti-NK1.1 Ab (PK136, eBioscience) or the α-GalCer-loaded CD1d tetramer (MBL, Nagoya, Japan), respectively. Macrophages were identified by staining MNCs with anti-F4/80 (BM8, eBioscience) and anti-CD11b Abs (M1/70, eBioscience), and their expression of TLR-9 was examined using anti-TLR-9 Ab (J15A7, BD Biosciences). B cells were identified by staining MNCs with anti-B220 Ab (RA3-6B2, eBioscience). Flow cytometry was performed on a Cytomics FC500 instrument (Beckman Coulter, Indianapolis, IN).
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Multiparameter Flow Cytometry Analysis

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Cells were stained with antibodies for B220 (RA3-6B2), CD25 (7D4), CD117 (2B8), IgD (11–26c.2a), or CD103 (M290) from BD Pharmingen (San Jose, CA). CD19 (6D5), CD5 (53-7.3), CD138 (281-2), IL-21R (A49), CD40 (3/23), MHCII (M5/114.15.2), CD138 (281-2), CD11c (N418) and PE/Cy7-conjugated anti-mouse IL-10 (JES5-16E3) antibodies were from Biolegend. For intracellular IL-10 staining, cells were stimulated in vitro in the presence of 10 μg/mL LPS (Sigma-Aldrich), 50 ng/ml phorbol 12-myristate 13-acetate (PMA, Sigma-Aldrich), 500 ng/ml ionomycin (Sigma-Aldrich) and 2 μM monensin (eBioscience). Cells were stained for surface markers before fixation with 2% paraformaldehyde and membrane permeabilization with 1% saponin. Fluorescence minus one (FMO) was used to determine the gating strategies. To analyze cells, a Cytomics FC500 instrument (Beckman Coulter, Hialeah, FL) was used before further assessment with Flowjo 7.6.1 software (Tree Star, Ashland, OR).
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Bacterial Cell Membrane Integrity Assay

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Bacterial cell membrane integrity assessment was evaluated by measuring propidium iodide (PI) (Sigma, Milan, Italy) uptake using flow cytometry [47 (link)]. Briefly, bacterial cultures in the mid-log phase were diluted in MHB to 1 × 106 CFU/mL, and were incubated at 37 °C with MIC and sub-MIC concentrations of the peptide for different time points. PI was added to all samples at a final concentration of 10 μg/mL. At the end of each time point incubation, the bacterial cells were analyzed using a Cytomics FC 500 instrument (Beckman-Coulter, Inc., Fullerton, CA, USA). Data analysis was performed using FCS Express3 software (De Novo Software, Los Angeles, CA, USA). Data are expressed as mean ± SEM.
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5

Generation and Characterization of Human Dendritic Cells

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Human DCs were generated from monocytes isolated from the PBMCs of healthy HLA-A2 donors using Histopaque®-1077 (Sigma-Aldrich). The PBMCs were resuspended in x-Vivo medium (Lonza, Walkersville, MD, USA) containing 1% human serum (Sigma-Aldrich) at a cell density of 1×107 cells/ml and plated in T75 flasks. The flasks were incubated in 5% CO2 at 37°C for 90 min, and nonadherent cells were then gently resuspended and removed. The adherent cells were then cultured in LGM-3 medium (Lonza, Walkersville, MD, USA) containing 1% human serum, recombinant human GM-CSF (1,000 units/ml, R&D Systems, USA) and IL-4 (1,000 units/ml, R&D Systems, USA) for 5 days. Next, the adherent cells were harvested, counted, and resuspended in culture medium. The phenotypes of iDCs were determined by flow cytometry using PE-conjugated anti-CD83 (1:20; IM2218U; Beckman Coulter, Marseille, France), anti-HLA-ABC (1:20; IM1838U, Beckman Coulter) and PE-conjugated anti-HLA-DR (1:20; IM1639, Beckman Coulter) antibodies. The expression of cell surface markers was then determined by flow cytometry using the Cytomics FC 500 instrument (Beckman Coulter, Fullerton, CA, USA).
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6

Monocyte Profiling by Flow Cytometry

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To observe the effects of PB on the phenotype of circulating monocytes, flow cytometry analysis was performed as previously reported [20 (link),21 (link)]. Subsets of circulating monocytes were assessed using blood anti-coagulated with ethylenediaminetetraacetic acid immediately after collection and maintained at room temperature for the entire staining procedure. Whole blood cell suspensions were stained with anti-mouse Ly6G-PerCP/Cy5.5 (clone 1A8), anti-mouse CD11b-PE (clone M1/70), and anti-mouse Ly6C-FITC (clone HK1.4) and their isotypes IgG2a-PerCP/Cy5.5, IgG2b-PE, and IgG2c-FITC, followed by an incubation period of 30 min at room temperature in the dark. After red blood cell lysis, the samples were subjected to flow cytometry with a Cytomics FC500 instrument (Beckman Coulter, Miami, FL, USA) and analyzed with FlowJo software (TreeStar, Ashland, OR, USA).
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