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45 protocols using avance neo 600

1

Structural Analysis of Synthesized PABS and Cellulose

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The chemical structure analyses of the synthesized PABS and cellulose samples were conducted with an FT-IR spectrophotometer (PerkinElmer Frontier, United States) equipped with an attenuated total reflectance accessory. The spectra were recorded in the wavenumber range of 500–4,000 cm–1 at a resolution of 4.0 cm–1 (An et al., 2020b (link)).
1H nuclear magnetic resonance (1H NMR) and gel permeation chromatography (GPC) analyses were performed for a more detailed chemical structure analysis of PABS. 1H NMR was measured using a 600-MHz Fourier transform nuclear magnetic resonance (FT-NMR) (Bruker Avance Neo 600, Germany). PABS (10 mg) was directly dissolved in 0.5 ml D2O (99.96%, Sigma-Aldrich) to record the 1H NMR spectrum. The molecular weight was analyzed by GPC (Shimadzu 20A, Japan) equipped with PLgel columns (PLgel 5 μm mixed-C and mixed-D and PLgel 3 μm mixed-E). PABS was dissolved in DMF containing 0.1% LiBr to determine its molecular weight (Youe et al., 2018 (link)).
The contents of different elements (C, H, N, and S) of the synthesized PABS and cellulose samples were determined using an elemental analyzer (Eurovector EA3000, Italy) with a thermal conductivity detector. The surface element analysis of cellulose samples was measured by XPS (Thermo Scientific, United Kingdom) (An et al., 2020a (link)).
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2

Purification and Characterization of Organic Compounds

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Unless otherwise noted, all chemicals were obtained from commercial vendors and used directly without further purification. Analytical reagent (AR) grade solvents were used for all reactions. Reaction progress was monitored by TLC on pre-coated silica plates (Huanghai HSGF254, 0.20 mm, pH 6.2–6.8) and spots were visualised by UV (254 nm). Flash column chromatography was done using silica gel (Qingdao Ocean Chemical Company, 200–300 mesh). 1H NMR and 13 C NMR spectra were recorded on a Bruker AVANCE neo 600. High resolution ESI-MS were recorded on Orbitrap Exploris 240 (Thermo Fisher Science, MA, USA).
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3

Comprehensive Characterization of Novel Materials

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Fourier transform infrared spectra (FT-IR) were obtained using a Niolet iN10 instrument with an ATR attachment, operating over 400–4000 cm−1 at ambient temperature. The nuclear magnetic resonance (NMR) measurements were carried out on an Avance NEO 600 (Bruker) at 500.13 MHz (1H). The spectra were referenced to the solvent signal (CDCl3: δ (1H) = 7.26 ppm). Thermogravimetric analysis (TGA) data were recorded on a Mettler tga 2 instrument over the range of 25 to 800 °C, with a heating rate of 5 °C min−1 under a flow of N2 (20 mL min−1). SEM and EDX were acquired on a Schottky Field Emission Scanning Electron Microscope ZEISS MERLIN Compact operating in variable pressure mode with an accelerating voltage of 15 keV.
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4

Bfl-1 HSQC-NMR Binding Assay

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The Mcl-1 HSQC-NMR studies were performed as previously reported.17 (link),19 (link) HSQC NMR experiments with Bfl-1 proceeded as follows, NMR spectra were acquired in NMR Buffer (20 mM NaH2PO4/Na2HPO4 pH 7.0, 150 mM NaCl, 0.5 mM DTT, and 0.5 mM TECP) supplemented with 10% D2O and 4% DMSO using 5mm D2O matched Shigemi NMR tubes. 15N labeled Bfl1-His (50 μM) was incubated with compounds 1 and 23. All NMR data were collected on a Bruker Avance NEO 600 MHz spectrometer at 298K with a TCl-H&F/C/N cryoprobe. A transverse relaxation optimized spectroscopy (TROSY) with a solvent suppression pulse sequence was used to acquire all HSQC data. NMRPipe66 (link) and Sparky (Goddard and Kneller, Sparky 3, University of California, San Francisco) were used for all NMR data processing and analysis. Assignments of Bfl-1 residues were obtained from the printed HSQC as it was not deposited online by previous studies.67 (link)
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5

Characterization of Auricularia auricula Melanin

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After the preparation of AAM solution (5 mg/mL), the absorption property of AAM was analyzed with ultraviolet-visible spectrophotometry, and the recording wavelength range was 200–1100 nm. Characteristic absorption of AAM powder was also carried out by FT-IR in the range of 4000–400 cm−1 at the revolution of 2 cm−1. The molecular weight of Auricularia auricula melanin was measured by GPC with ultrahydrogel linear columns (300 mm × 7.8 mm) and Waters 2414 refractive index detector. The 1H NMR spectra of AAM was recorded on a Bruker AVANCE NEO 600 using tetramethylsilane as an internal standard.
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6

NMR Analysis of Terpinen-4-ol Metabolites

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NMR analysis was conducted to identify the metabolites of terpinen-4-ol. M1 and M2 were separated by HPLC, collected, and frozen (–80°C) overnight. The samples were evaporated by freeze-dryer (Operon, Republic of Korea).
1H and 13C nuclear magnetic resonance (NMR) spectra were measured on an Avance NEO-600 instrument (Bruker, Germany) operated at 600 and 150 MHz, respectively. Chemical shifts are given in δ (ppm) values relative to those of the solvent CDCl3H 7.26; δC 77.1) on a tetramethylsilane scale. Standard pulse sequences programmed into the instruments were used for each two-dimensional measurement. The JCH value was set at 8 Hz in heteronuclear multiple bond connectivity (HMBC) spectra.
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7

Nuclear Magnetic Resonance Analysis

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1H and 13C nuclear magnetic resonance (NMR) was performed using on a Bruker Avance NEO 600 spectrometer equipped with a 5 mm broadband inverse triple resonance probe 1H BB (31P-103Rh)/31P with Z field gradients and Bruker 400 MHz spectrometers (except indication for 300 MHz) with IconNMR automation software that allows fully automated acquisitions. All chemical shifts for 1H and 13C were expressed in parts per million (ppm) relative to TMS using 1H (residual). DMSO-d6 was used as solvent (except indication).
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8

1H-NMR Spectroscopy Using Bruker Spectrometer

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1H-NMR spectra were recorded on a Bruker 600 MHz NMR spectrometer (Avance Neo 600, Bruker, Billerica, MA, USA), using CDCl3 as the solvent and TMS as an internal standard (δTMS = 0.0 ppm).
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9

NMR Spectroscopy Characterization Protocol

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All NMR spectra were acquired on a Bruker Avance Neo 600 MHz spectrometer equipped with an inverse 1H/13C/15N/19F quadruple resonance cryoprobehead and z-field gradients. Topspin 4.0.4 and CcpNmr Analysis 2.4 were used for spectral processing and analysis (40 (link)). An optimized WATERGATE with w5 element was employed for solvent suppression in 1D spectra and 2D NOE experiments (41 (link)). NOESY spectra were recorded with mixing times of 80–300 ms in either 90% H2O/10% D2O or 100% D2O. DQF-COSY spectra were acquired in D2O with solvent suppression through presaturation. Phase-sensitive 1H–13C HSQC experiments optimized for a 1JCH of 170 Hz were acquired with a 3–9–19 solvent suppression scheme in 90% H2O/10% D2O usually employing a spectral width of 7.5 kHz in the indirect 13C dimension and 512 t1 increments.
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10

NMR Characterization of N4BP1 CUE Domain

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All NMR samples (300-500 μM) were prepared in 20 mM phosphate buffer (pH 7.0), 50 mM NaCl, 1 mM DTT, 10% D2O. For atom assignments, N4BP1 CUE domain was uniformly 15N,13C-labelled and assignments were completed using standard triple-resonance assignment methodology [62 ]. A total of 97% of the potential backbone (disregarding the proline residues) and 87% of the potential side-chain resonances were assigned (the first 3 N-terminal residues from the tag are ignored). Titration experiments involving 15N-labelled N4BP1 CUE domain were performed by addition of up to 5 molar equivalents of unlabelled Ub. Titration experiments involving 15N-labelled Ub were performed by addition of up to 5 molar equivalents of unlabelled N4BP1 CUE domain. The magnitude of chemical shift perturbations (CSPs) for each resonance was quantified according to the equation Δ δ = (( δ Hbound- δ Hfree)2 + (( δ Nbound- δ Nfree)/a)2)1/2, where a = ( δ Nmax- δ Nmin)/ ( δ Hmax- δ Hmin). NMR experiments were performed on two types of Bruker spectrometers, an AvanceNEO 600 equipped with a 5 mm 1H/13C/15N inverse triple resonance probe and an Avance III HD 700, equipped with a 5 mm 1H/13C/15N triple-resonance PFG cryoprobe. All spectra were collected at 303.15 K. Data were processed using NMRPipe [63 (link)] and analysed using CcpNmr Analysis V2 [64 (link)].
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