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8 protocols using β tubulin

1

Western Blot Analysis of Protein Expression

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Cells were lysed in ice-cold RIPA cell buffer (P0013B, Beyotime Biotechnology, China) supplemented with protease inhibitor cocktail. The proteins (40–100 μg) were separated on 10–15% PAGE gels and electrotransferred onto polyvinylidene fluoride membranes. After blocking with 5% skimmed milk, the membrane was incubated with specific primary antibody and horseradish peroxidase-conjugated secondary antibody. The antibodies used are Flag (GNI4110-FG-S, GNI, Japan, 1:1000), HA (GNI4110-HA-S, GNI, Japan, 1:1000), Stat3 (12640S, Cell Signaling Technology, USA,1:1000), phospho-Stat3Y705 (9131S, Cell Signaling Technology, USA, 1:1000), Socs3 (sc-73045, Santa Cruz, 1:1000), Prdm14(D221722, BBI, China, 1:1000), H3K27me3 (39055, Active Motif, China, 1:1000), H3 (4620s,Cell Signaling Technology, USA, 1:1000) and β-Tubulin (200608, ZENBIO, China, 1:2000). The band density was analyzed with ImageJ according to ImageJ User Guide. Briefly, we inverted the greyscale images and select sample bands with rectangular selections. The proteins levels were normalized with respect to the β-Tubulin level, and the grayscale ratio of protein/β-Tubulin was calculated and visualized with GraphPad Prism 8.0.
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2

Brain Western Blot Analysis

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Western blot (WB)analysis was performed as previously described [20 ]. Briefly, brains were removed immediately after anesthetization and decapitation were performed. Samples were collected from the object region of brains and lysed in RIPA buffer containing protease and phosphatase inhibitors (Sigma). Then protein extract was obtained after centrifugation. Equal amounts of protein (40 mg) were loaded onto each lane of SDS-PAGE gels. After gel electrophoresis, proteins were transferred onto nitrocellulose membranes (Millipore) and blocked in nonfat milk at room temperature for 2 h. Then membranes were incubated in primary antibodies at 4 °C for 24 h and incubated in appropriate secondary antibodies at room temperature for 1 h subsequently. The following antibodies were used: Iba-1(Wako), iron regulatory protein 1 (IRP1, ZenBioScience), divalent metal transporter 1 (DMT1, MyBioSource), transferrin receptor1 (TfR1, ZenBioScience), ferritin (MyBioSource), ferroportin1 (Fpn1, MyBioSource), β-actin (ZenBioScience) and β-tubulin (ZenBioScience). Protein bands were visualized using nickel-intensified DAB solution, and band densitometry analysises were performed using Image J software (National Institutes of Health). The housekeeping proteins β-actin or β-tubulin were used as a loading control.
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3

Protein Isolation and Western Blotting

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Protein isolation was performed from the hepatocyte using protein extraction kit (BestBio Biotech Co. Ltd., Shanghai, China), and the BCA protein assay kit (BestBio) was used to determine the concentration of protein samples. Western blotting was performed with following the method described previously (Cui et al., 2020b ) with the following primary antibodies: anti-PPARα (1:2,000, ab233078, Abcam, Cambridge, UK), anti-PCNA (1:1,000, A0264, ABclonal Technology, Wuhan, China), anti-CDK2 (1:500, 120395, Zen-Bio, Chengdu, China), anti-caspase-3 (1:5,000, ab214430, Abcam) and caspase-8 (1:1,000, ab227430, Abcam), and caspase-9 (1:1,000, bs-20773R, Bioss, Beijing, China), anti-PDK1 [1:1,000, #3062, Cell Signaling Technology (CST), Boston, United States], anti-p-PDK1 (1:1,000, #3061, CST), anti-AKT (1:1,000, #9272, CST) and p-AKT (1:1,000, #9271, CST), and anti-Gsk3-β (1:1,000, A2081, ABclonal) and p-Gsk3-β (1:1,000, AP0261, ABclonal). Secondary antibodies: goat anti-mouse (1:5,000, 511103, Zen-Bio) and goat anti-rabbit (1:5,000, 511203, Zen-Bio). β-Tubulin (1:1,000, 250063, Zen-Bio) was used as a reference.
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4

Protein Extraction and Western Blot Analysis

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After plating U87 and U251 cells in six-well plates, RIPA buffer (KeyGen, Jiangsu, China) was added to lyse the cells on a 4°C shaker for approximately 10 minutes, and cells were subsequently scraped off the six-well plates into EP tubes, which were placed on a 4°C shaker for approximately 30 minutes. Next, the lysates were subjected to 15-minute centrifugation at 12,000 rpm to remove residue. Protein concentrations were determined using the BCA Protein Assay Kit (KeyGen, Jiangsu, China). SDS-PAGE was used to separate the protein extracts, which were then transferred onto polyvinylidene difluoride (PVDF) membranes, followed by incubation with the following primary antibodies overnight on 4°C shakers: Per2 (Abcam, ab179813), Id3 (Abbkine, ABP58864), PTEN (BIOSS, bsm-52369R), AKT (Proteintech, 60203-2-Ig), p-AKT (T308) (Proteintech, 29163-1-AP), p-AKT (S473) (Proteintech, 80455-1-RR), Smad5 (BIOSS, bs-13890R), p-Smad5 (BIOSS, bs-19918R), GAPDH (BIOSS, bsm-33033M) and β-tubulin (Zen Bioscience Chengdu, China, 200608). The membranes were incubated with secondary antibodies the next day (goat anti-mouse 926–32210, goat anti-rabbit 926–32211, LI-COR, USA) for 2 hours at ambient temperature before detection.
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5

Western Blot Analysis of Protein Levels

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Equal quantities of the proteins were separated by SDS-PAGE gels, transferred to nitrocellulose membranes, incubated with 5% skimmed milk, and then incubated with the primary antibodies at 4 °C overnight. The primary antibodies were diluted as follows: NRF2 (1:1000, GeneTex, Irvine, CA, USA), β-tubulin (1:2000, ZenBio, Chengdu, Sichuan, China), and Lamin A/C (1:2000, Proteintech, Chicago, IL, USA). The membranes were incubated with the HRP-labeled secondary antibody in blocking buffer at room temperature. Blots were developed using an enhanced chemiluminescence reagent (Thermo Fisher Scientific, Waltham, MA, USA). The relative protein density was quantified using Image J software (National Institutes of Health, Bethesda, MD, USA).
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6

Western Blot Analysis of Muscle Stem Cells

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The antibodies used were MyHC (381620, ZENBIO), Myomaker (A18158, ABclonal), HuR (382170, ZENBIO), β-tubulin (200608, ZENBIO), and horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (511203, ZENBIO). Total protein from in vitro cultured MuSCs was extracted using a total protein extraction kit (Solarbio, Beijing, China) and quantified using the BCA Protein Quantitation Kit (BestBio, Shanghai, China). In brief, ~20 µg of the qualified protein per samples were separated on a 10% SAS-PAGE, transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Burlington, MA, USA), blocked with 5% non-fat milk for 2 h at 37 °C, incubated with primary anti-rabbit for MyHC (1:500), Myomaker (1:1000), and HuR (1:1000) at 4 °C overnight and with a secondary antibody conjugated with HRP (1:10,000) for 1.5 h at 37 °C. Eventually, protein bands were exposed via the enhanced chemiluminescence detection system (BeyoECL Plus, TIANGEN, Beijing, China). β-tubulin antibody (1:1000) worked as a loading control.
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7

Western Blot Analysis of Testicular Proteins

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The testicular tissues were lysed in RIPA buffer (150 mM NaCl; 50 mM Tris-Cl, pH 8; 1% NP-40; 0.5% deoxycholate; 0.1% SDS) (Solarbio, Beijing, China) with phenylmethylsulfonylfluoride (PMSF, final concentration 1 mM) (Solarbio, Beijing, China). The resulting samples were separated using 10% SDS-PAGE and transferred to PVDF membranes. After blocking for 1 h in 5% non-fat milk in TBST at 25 °C, the membranes were incubated with specific primary antibodies overnight at 4 °C. The primary antibodies used were KDM1A (Novus, Centennial, CO, USA, 1:1000), KDM4B (Abcam, Cambridge, UK,1:2000), β-tubulin (Zen Bioscience, Chengdu, China, 1:5000). The primary antibody binding was visualized with horseradish peroxidase-conjugated goat anti-rabbit or anti-mouse IgG (1:10,000, ZSGB-BIO, Beijing, China) for 1 h at 25 °C. The signal intensities were measured using Chemiluminescent HRP Substrate (Millipore, Billerica, Massachusetts, USA) and image analysis software (ImageJ1.8.0, NIH, Bethesda, MD, USA).
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8

Hepatocyte Protein Extraction and Western Blot

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Hepatocyte protein was isolated using a protein extraction kit (BestBio Biotech Co. Ltd., Shanghai, China), and the BCA protein assay kit (BestBio) was used to determine the concentration of protein samples.
Western blotting was performed with the method described by [47] with the following primary antibodies: anti-PPARα (Abcam, Cambridge, UK), anti-PCNA (ABclonal Technology, Wuhan, China), anti-CDK2 (Zen-Bio, Chengdu, Chin), anti-caspase-3 and caspase-8 (Abcam), and caspase-9 (Bioss, Beijing, China), anti-PI3K [Cell Signaling Technology (CST), USA], anti-p-PI3K (CST), anti-AKT and p-AKT (CST), and anti-Gsk3β and p-Gsk3-β (ABclonal). Goat anti-mouse and goat anti-rabbit secondary antibodies (Zen-Bio) β-Tubulin (Zen-Bio) was used as a reference.
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