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Df12303

Manufactured by Affinity Biosciences
Sourced in United States, China

The DF12303 is a laboratory equipment used for DNA/RNA extraction and purification. It is designed to automate the process of nucleic acid isolation from various biological samples. The core function of the DF12303 is to provide a reliable and efficient method for extracting and purifying nucleic acids for downstream applications, such as PCR, sequencing, and molecular biology studies.

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11 protocols using df12303

1

Western Blot Analysis of Osteogenic Differentiation

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mCOBs after 14 days of osteogenic induction were collected and lysed in RIPA buffer, as previously described (29 (link)). The protein concentrations in each sample were measured using Bradford assays with Coomassie brilliant blue G-250 (Bio-Rad, California, USA). A total of 20 μg protein was subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS‐PAGE). The SDS membranes were blocked with 5% nonfat milk for 1 hour and incubated with primary OCN antibodies overnight (DF12303, Affinity Biosciences, Beijing, China). ACTB (Abclonal, Wuhan, China) was examined as the housekeeping reference protein. After incubation for 1 hour with horseradish peroxidase (HRP)-conjugated anti-rabbit secondary antibody at a dilution of 1:5,000, band signals were detected using a Bio-Rad imaging system (Bio-Rad, USA) with NcmECL High (NCM Biotech, Jiangsu, China). The Image lab software program (Bio-Rad, USA) was utilized to perform relatively quantitative analysis of protein levels.
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2

Evaluating Osteogenic Potential of Rat BMSCs

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The protein expression of SD rat BMSCs was detected by Western Blotting. After 24 h, the medium was replaced with normal osteogenic induction medium and osteogenic induction medium containing 10% of different scaffold extracts. After culturing for 14 days, cell precipitation was collected; 100 µl of RIPAcell lysate (Beyotime, China) containing 1 mM PMSF, (Beyotime, China) was added to each 6-well plate, lysed, centrifuged, and collected the supernatant. Total cellular protein was quantified using a BCA protein assay kit. Then the samples were subjected to SDS electrophoresis and transferred to a polyvinylidene fluoride membrane. The membranes were first blocked with 5% skim milk for 1 h, and then incubated at 4 °C overnight with primary antibodies as follows: RUNX2 (AF5186, Affinity, 1:500), OCN (DF12303, Affinity, 1:500), ALP (DF6225, Affinity, 1:500), and Collagen I (AF7001, Affinity, 1:500). After being washed with TBST three times, the membranes were incubated with HRP-conjugated secondary antibodies (1:10,000). The antigen–antibody complex was visualized. Signal intensities were quantified using ImageJ software.
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3

Immunohistochemical Analysis of Stem Cell Markers

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Paraffin sections were warmed at 65 °C for 1 h, dewaxed with xylene and ethanol, subjected to antigen retrieval by the dropwise addition of 0.25% trypsin and incubated at 37 °C for 30 min. Peroxidase blocking solution was added dropwise, and the sections were incubated for 15 min. Then, the goat serum working solution was added dropwise to the tissue for blocking, and the sections were incubated at 37 °C for 30 min. SDF-1α (ab9797, 1:100; Abcam), CD44 (ab189524, 1:50, Abcam), CD90 (DF6849, 1:50, Affinity), RUNX2 (ab23981, 1:50, Abcam), and OCN (DF12303, 1:50, Affinity) primary antibodies were added dropwise to the tissues until they were fully covered, and the sections were incubated at 4 °C for 12 h. The samples were heated at 37 °C for 30 min, incubated with DV-9001 for 30 min at 37 °C, and incubated with a secondary antibody for 60 min at 37 °C. DAB was added for color development, and then the sections were stained with hematoxylin for 5 min, differentiated with hydrochloric acid-alcohol for 5 s and rinsed with tap water until the tissue appeared blue. The sections were dehydrated in ethanol, cleared in xylene, mounted with neutral gum, allowed to dry naturally, observed and imaged.
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4

Osteogenic Differentiation Protein Profiling

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Proteins of P4 or P5 BMSCs for osteogenic differentiation induction after 7 days were extracted. The detailed Western blotting routine was performed as previously described (18 (link)). The primary antibodies used were: cannabinoid receptor 1 (CB1; DF4918, dilution: 1:1,000, Affinity), cannabinoid receptor 2 (CB2; DF8646, dilution: 1:1,000, Affinity), phosphorylated p38 (p-p38; #4511, dilution: 1:1,000, Cell Signaling Technology), p38 (#8690, dilution: 1:1,000, Cell Signaling Technology), Runt-related transcription factor 2 (Runx2; AF5186, dilution: 1:1,000, Affinity), ALP (DF12525, dilution: 1:1,000, Affinity), osteocalcin (OCN; DF12303, dilution: 1:1,000, Affinity) and β-actin (BM0627, dilution: 1:200, Boster, China). Blots were quantified using ImageJ software.
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5

Protein Expression Analysis of Osteogenic Markers

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The cell specimens from various groups were lysed by RIPA lysis buffer (Beyotime, Shanghai, China), and the corresponding protein contents were determined by the enhanced BCA protein analysis kit (Beyotime), according to the manufacturer's guide. Subsequently, equal quantities of protein of each sample was separated by using 10%–12% SDS-PAGE and were transferred onto the polyvinylidene fluoride membrane. The membrane was then blocked at 25°C for 1 h with 5% non-fat dried milk in Tris-buffered saline with Tween (TBST) and incubated with the specific primary antibody (1:500–1:1000) overnight at 4°C. Then the samples were incubated with the horseradish peroxidase (HRP)-conjugated secondary antibody (1:2000; Abcam, Cambridge, MA, USA) at 25°C for 2 h. The protein expression was observed with enhanced chemiluminescence reagents (Amersham, Piscataway, NJ, USA). The primary antibodies used in the present study are listed as follows: SMAD7 (25840-1-AP, Proteintech, Wuhan, China), ALP (DF6225, Affinity, Cincinnati, OH, USA), BMP2 (AF5163, Affinity, Cincinnati, OH, USA), RUNX2 (AF5186, Affinity, Cincinnati, OH, USA), and Osteocalcin (DF12303, Affinity, Cincinnati, OH, USA).
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6

Immunohistochemical Analysis of Bone Regeneration

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The sections were dewaxed, hydrated and placed in citrate buffer (0.5 M, pH 5.0) for antigen extraction. The sections were exposed to 3% methanol/H2O2 and endogenous peroxidase was blocked with 3% w/v BSA. The sections were incubated overnight with anti-OCN (1:100, Affinity, DF12303) and anti-Runx2 (1:100, Affinity, AF5186) primary antibodies, then incubated with horseradish peroxidase-coupled secondary antibodies (1:200, S0001, Affinity). Nuclei were stained and counterstained with diaminobenzidine and hematoxylin.
The gene expression of pro-inflammatory factors IL-1β (1:100, Affinity, AF5103) and IL-4 (1:100, Affinity, AF5142) was analyzed to detect the inflammatory mechanism of the scaffold's ability to promote bone regeneration.
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7

Immunofluorescence and IHC Analysis of Osteogenic Markers

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Confocal culture dishes (φ10 mm) or slides were incubated with anti‐runt‐related transcription factor 2 (RUNX2) (ab76956, Abcam, Cambridge, UK, 1:100) and anti‐osteocalcin (DF12303, Affinity, Cincinatti, OH, USA, 1:100) at 4°C for ~12 h. The samples were incubated with secondary antibodies at 37°C for 40 min (1:200 or 1:400). Immunofluorescence images were obtained using confocal scanning microscopy (FV1200, Olympus, Tokyo, Japan) after sealing with DAPI, and the immunohistochemical slides were incubated with DAB for 1 to 4 min and stained with hematoxylin for 1 min. The immunostained areas were quantified using ImageJ (USA).
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8

Protein Expression Analysis of BMSCs

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Total proteins were obtained from BMSCs after 3 days in culture using radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, China). Then 30 μg protein lysate samples were separated by 8–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) before transfer to polyvinylidene difluoride (PVDF) membranes. Then the PVDF membranes were incubated overnight at 4°C with primary antibodies including COLI (AF7001, dilution: 1:200, Affinity Biosciences, United States), OCN (DF12303, dilution: 1:100, Affinity Biosciences, United States), OPN (ab63856, dilution: 1:1,000, Abcam, United States), and GAPDH (ab9484, dilution: 1:200, Abcam, United States). Horseradish peroxidase-conjugated goat anti-rabbit secondary antibody (S0001, dilution: 1:2,000, Affinity Biosciences, United States) was added for incubation for 1 h at room temperature. Finally, enhanced chemiluminescence reagents (Millipore, United States) were utilized to visualize the immunocomplexes.
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9

Protein Extraction and Western Blot Analysis

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Proteins were extracted from rat femur tissues or cells with lysis solution (P0013, Beyotime, China) containing 1% PMSF (ST506, Beyotime). The protein concentration was determined by the BCA kit (P0011, Beyotime). After denaturation and SDS-PAGE electrophoresis, separated proteins were transferred onto PVDF membranes (IPVH00010, Millipore, USA). The membranes were blocked with 5% nonfat milk in TBST for 1 h, and incubated overnight at 4°C with the primary antibodies against OCN (DF12303, 1:500, Affinity, China), collagen-l (AF0134, 1:500, Affinity), RUNX2 (AF5186, 1:1000, Affinity), and β-actin (sc-4778, 1:1000, Santa Cruz, USA). After washing with TBST, the membranes were incubated for 45 min at 37°C with secondary antibodies including HRP-labeled goat anti-rabbit IgG (A0218, 1:5000, Beyotime) and HRP-labeled goat anti-mouse IgG (A0216, 1:5000, Beyotime). The immunoreactive protein was visualized by a WD-9413B gel imaging system (Beijing Liuyi, China) with ECL kit (P0018, Beyotime).
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10

Histological and Immunohistochemical Analysis of Bone Samples

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For histological and immunohistochemical (IHC) analyses, the samples were decalcified in 10% EDTA for 4 weeks after micro-CT imaging. Then, 4-μm-thick sections were then subjected to H&E staining and Masson’s trichrome staining. For IHC staining, 6-μm-thick sections were incubated with primary antibodies against OCN (1:100; DF12303, Affinity Biosciences, Cincinnati, OH, USA), VEGF (1:200; AF5131, Affinity Biosciences, Cincinnati, OH, USA), and CD31(1:200; AF6191, Affinity Biosciences, Cincinnati, OH, USA). The immunoreactivity of the analysis was determined using horseradish peroxidase detection system.
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