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Alpha amanitin

Manufactured by Santa Cruz Biotechnology

Alpha-amanitin is a primary metabolite isolated from the death cap mushroom, Amanita phalloides. It functions as a potent inhibitor of RNA polymerase II, which is a critical enzyme involved in the transcription of genetic information from DNA to messenger RNA.

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2 protocols using alpha amanitin

1

Comprehensive Cell Culture Protocol

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T80 cells were grown in RPMI Medium supplemented with 10% FBS. HeLa, 293T, U2OS cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% FBS. RPE1 cells were grown in DMEM F12 media supplemented with 10% FBS. RNF2 knockout T80 clones were generated using the CRISPR-Cas9 Double Nickase plasmid synthesized by Santa Cruz Biotechnology. U2OS cells stably expressing mCherry-LacI-Fok1 fusion protein that induces a DSB at a single genomic locus is previously described [58 (link)]. pyCAG_RNaseH1_WT and D210N plasmids were a gift from Dr. Xiang-Dong Fu (Addgene plasmids #111906, # 111904). Hydroxyurea (AC151680050), Aphidicolin (61197–0010) and DRB (NC9855607) were purchased from Fisher Scientific. alpha-amanitin was purchased from Santa Cruz Biotechnology (sc-202440). IdU (I7125) and CldU (C6891) were purchased from Sigma Aldrich. ATR inhibitor (AZ20) was purchased from SelleckChem.
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2

Culturing and Manipulating MCF-10A Cells

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Cells were cultured at 37 °C in a 5% CO2 environment. MCF-10A cells were cultured in mammary epithelial basal medium (MEBM) supplemented with 0.5 mg/ml Hydrocortisone solution, 20 ng/ml EGF, 100 ng/ml cholera toxin, 100 μg/ml recombinant human insulin and bovine pituitary extract (Lonza, Portsmouth, NH). The development of MCF-10A cells inducibly expressing non-specific shRNA or shRNA against BRG1 was described in previous work (Imbalzano et al., 2013 (link)). Knockdown of BRG1 was induced by adding doxycycline (Sigma-Aldrich, St. Louis, MO) at 10 μg/ml final concentration for 48 h.
Transient transfection of plasmids was performed using Lipofectamine 2000 or 3000 reagent (Invitrogen, Carlsbad, CA) following the manufacturer’s protocol. Development of EGFP-SRm160 and mRFP-SRm160 plasmids was descried in our previous work (Wagner et al., 2003 (link)).
The LINC complex was disrupted by transfecting cells with GFP-KASH4(Roux et al., 2009 (link)). F-actin was disrupted with 0.2 μg/ml Latrunculin A (LatA, Cayman Chemical, Ann Arbor, MI) for 30 min before imaging. RNA polymerase II (Pol II) was inhibited with 50μg/ml alpha-amanitin (Santa Cruz Biotechnology, Dallas, TX) for 4 h.
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