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Streptavidin alexa fluor 555

Manufactured by Thermo Fisher Scientific
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Streptavidin-Alexa Fluor 555 is a conjugate of streptavidin and the fluorescent dye Alexa Fluor 555. Streptavidin is a tetrameric protein that binds strongly to the vitamin biotin. The Alexa Fluor 555 dye provides a bright and photostable fluorescent signal when excited at the appropriate wavelength.

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49 protocols using streptavidin alexa fluor 555

1

Immunohistochemical Analysis of Germinal Centers

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Seven μm spleen and heart cryostat sections were air-dried and fixed in acetone. Primary mAbs specific for the following mouse epitopes were used for immunohistochemical/fluorescent staining: C4d (clone 16-D2 Abcam, Cambridge, UK) and IgG-FITC (BD Biosciences, San Diego, CA, USA). Splenic GCs were identified by double-labeling sections with rat anti-mouse B220-APC (clone RA3-6B2) and rat anti mouse GL7-FITC (both BD Biosciences). Numbers of GL7+ GCs were expressed as a percentage of total B220+ lymphoid follicles (13 (link)). HEL-specific GCs were detected using rat anti-mouse GL7-FITC and biotinylated-HEL protein (developed in-house) combined with Streptavidin-Alexa Fluor 555 (Thermo Fisher Scientific) after initially blocking endogenous avidin/biotin activity using an avidin/biotin blocking kit (Vector Laboratories, Burlingame, CA, USA). CD4 T cells within GCs were located with rat anti-mouse CD4-biotin (BD Biosciences) & Streptavidin-Alexa Fluor 555 (Thermo Fisher Scientific). Confocal images were captured with a Leica SP5 confocal microscope using LAS AF software, version 2.7.2.9586 (Leica Microsystems, Wetzlar, Germany). See also Table S1.
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2

Mitochondrial Staining of Oocytes and Cells

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For mitochondria staining, living oocytes or cells were stained with 200 nM MitoTracker 633 dye (Thermo Fisher Scientific) in an atmosphere of 5% CO2 at 37 °C for 30 min. After washed with fresh medium, oocytes were fixed in 4% paraformaldehyde in PBS (pH 7.4) for 30 min and permeabilized in 0.5% Triton X-100 for another 30 min at room temperature. Then, oocytes were blocked with 1% bovine serum albumin-supplemented PBS for 60 min. For Alexa Fluor® 555 streptavidin (Thermo Fisher Scientific) staining, oocytes were incubated with Alexa Fluor® 555 streptavidin (1:100) for 2 h at room temperature. DNA was stained with Hoechst 33342 (10 μg/mL) for 30 min. Finally, oocytes were washed three times followed by mounting on glass slides, and observed using a confocal laser scanning microscope at ×63/1.40 (Carl Zeiss, Jean, Germany).
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3

Fluorescent Labeling of Mouse Antibodies

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Goat anti-mouse Alexa Fluor 555 (A-21425; Life Technologies) and Streptavidin Alexa Fluor 555 (S21381; Life Technologies).
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4

Biotinylated Viral Glycan Binding Assay

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Viruses were directly labeled with a biotin handle as previously described (Watanabe et al., 2014 (link)). Labeled viruses were diluted to 256 hemagglutinating units (HAU) in 1X PBS and applied directly to the slide surface for 1h. Following the initial incubation, arrays were washed, by dipping 3 times in 1X PBS and again 3 times in 1X PBS. Washed arrays were incubated with 2ug/mL streptavidin-AlexaFluor555 (LifeTechnologies) in 1X PBS, for 1h. Following detection, arrays were washed sequentially, by dipping, 3 times in 1X PBS, 3 times in 1X PBS and, finally, 3 times in deionized H2O. Washed arrays were dried by centrifugation and immediately scanned for AlexaFluor555 signal on an Innoscan 1100AL (Innopsys) confocal microarray scanner. Signal intensity from scanned arrays was collected using Mapix (Innopsys). Signal intensity was calculated for the mean signal intensity of 4 replicate spots for each printed glycan and graphed using Excel (Microsoft).
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5

Visualizing Glycosaminoglycan Structures

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HA was detected using biotinylated Hyaluronan Binding Protein (bHABP; AMS Biotechnology, Abingdon, UK). WFA histochemistry was performed using biotinylated Wisteria floribunda agglutinin (bWFA; Sigma-Aldrich, St. Louis, MO, USA), a lectin that binds to N-acetylgalactosamine residues of CSPG-glycosaminoglycan chains and glycoproteins, as a marker of PNNs (Giamanco et al. 2010 (link); Hartig et al. 1992 (link)). After blocking, sections were incubated in a solution of bHABP or bWFA, both dissolved in PBS containing 1% BSA, overnight at 4 °C. Reactions were visualized by incubating the samples with Streptavidin AlexaFluor 555 (Life Technologies, Carlsbad, CA, USA) for 1 h, diluted in 1:1000, in PBS.
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6

Retrograde Labeling of Projection Neurons in Mouse PPC and ACC

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BDA (Thermo Fisher Scientific, Waltham, MA, USA, D1817) and fluorescent retrograde tracer cholera toxin B subunit conjugated to fluorophore Alexa 488 (CTB488, Thermo Fisher Scientific, Waltham, MA, USA, C34775) were used to label neurons that projected from the target regions. BDA and CTB488 were unilaterally delivered into the PPC and ACC of male C57BL6J mice using a glass micropipette at the following coordinates (in mm): (i) −2.0 AP, +1.5 ML from bregma, −0.5 DV from the brain surface for the PPC; (ii) +1.0 AP, +0.5 ML from bregma, −0.5 DV from the brain surface for the ACC. Mice were injected with 200 nl of 10% BDA in the PPC or 200 nl of 1% CTB488 in the ACC, and mice were perfused 7 days or 5 days after injection. BDA was visualized by staining with streptavidin-Alexa Fluor 555 (1:1000, Life Technologies, Carlsbad, CA, USA).
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7

Fluorescent Labeling Reagents Protocol

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Streptavidin-Alexa Fluor 647, streptavidin-Alexa Fluor 555, neutravidin-Oregon Green, and avidin-Alexa Fluor 633 were purchased from Life-Technologies (Invitrogen), dissolved in deionized water (18.2 MΩ·cm at 25 °C) to a concentration of 1 g/L, and stored at −20 °C before use. Pyrrole, NaCl, biotin, Tween-20, and potassium phosphate monobasic and dibasic were obtained from Sigma Aldrich and used as received. BioBeads SM2 were obtained from Bio-Rad. Buffers were freshly prepared in deionized water.
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8

Visualizing DNA Replication in Cell Nuclei

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HeLa and mouse 3T3 cells were cultured in Dulbecco's modified Eagles Media (D-MEM), 10% (v/v) foetal calf serum and penicillin/streptomycin/glutamine (all Gibco). 3T3 cells were synchronized in G 0 by contact inhibition and serum depletion followed by release into fresh media [44] . Late G1-phase and S-phase nuclei and S-phase extracts were prepared as described [44] [45] [46] . To assess replication initiation or elongation, 5×10 4 late G1-or S-phase 3T3 nuclei were mixed as appropriate with 10 µL of S-phase HeLa extract (supplemented with energy regenerating system, dNTPs and biotinylated dUTP) plus the nucleotide under test at 20 µM. Reactions were incubated at 37°C for 60 min, and biotin-labelled nascent DNA visualized by fluorescence microscopy after detection with streptavidin-Alexa Fluor 555 (Life Technologies) and counterstained with Hoechst 33258. The proportion of labelled nuclei was quantified by inspection at 1000× magnification, and all nuclei with discrete replication foci or intense uniform labelling were scored positive as previously described [45] .
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9

Immunostaining Characterization of Proteins

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Antibodies used in this study are as follows. Goat anti-FSTL1 (ab11805; Abcam), rabbit anti-FSTL1 (Proteintech), rabbit anti-DIAPH1 (5486; Cell Signaling Technology), rabbit anti-KSRP (A302-22A; Bethyl Laboratories), mouse anti-KRT14 (clone LLO01), mouse anti-EGF (clone 10825; R&D Systems), mouse anti-TGFβ1 (Novacastra), rabbit anti-GFP (Covance), rabbit anti-cMyc (Sigma-Aldrich), and rabbit anti-Wnt7a (ab100792; Abcam). Streptavidin Alexa Fluor 555, chicken anti-goat Alexa Fluor 488, and donkey anti-rabbit/mouse Alexa Fluor 488/555 were from Molecular Probes. Rabbit anti-Arp3 (4738), phospho (9101), and total ERK antibodies (9102) were from Cell Signaling Technology. Rabbit anti-Arpin (ABT251) was purchased from Merck Millipore. Recombinant human FSTL1 (His-tagged) expressed and purified from mammalian cells was purchased from Thermo Fisher Scientific.
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10

Visualization of WABI Colocalization with BTK

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After treatment with WABI, MM1R cells were fixed in 4% (v/v) formaldehyde. Cells were stained with rhodamine–phalloidin (Molecular Probes, Thermo Fisher Scientific Inc., Waltham, MA, USA) to visualize the cellular morphology, Hoechst 33,258 (Sigma-Aldrich, St. Louis, MO, USA) to visualize the nucleus and streptavidin-Alexa Fluor555 (Molecular Probes, Thermo Scientific, MA, USA) to visualize biotinylated WA. To determine WABI colocalization with specific proteins (BTK), WABI-treated MM1R cells were immunostained with primary (anti-rabbit BTK, Cell Signaling Technology, mAb#8547) and corresponding labeled secondary antibodies (anti-rabbit Alexa Fluor-488, Molecular Probes, Thermo Scientific, MA, USA). Cells were then placed on glass slides and mounted with coverslips using FluoromountTM (Sigma-Aldrich, St. Louis, MO, US)Confocal imaging was carried out by a laser-scanning microscope equipped with a Plan-Apochromat 63X/1.40 Oil DIC objective lens and excitation wavelengths 405, 488, 561 and 640 nm (Zeiss LSM 800, Carl Zeiss, Germany). At least 20 different microscopic fields were analyzed for each sample using ZEN imaging software (Carl Zeiss). ZEN liteTM (Carl Zeiss, Germany) was used to perform image reconstruction and presentation.
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