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17 protocols using streptavidin efluor 450

1

Multicolor Flow Cytometry for Immune Cell Analysis

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Single-cell suspensions were stained using mouse-specific Abs, including FITC–anti-CD11b (BD Biosciences), Alexa 647–anti-IL-23p19 (eBioscience), PE–anti-TNF-α, PE/Cy7–anti-Ly6C for macrophages and subsets. For CD4 T cell and subset staining, cells were stained with FITC–anti-CD4, PE/Cy7–anti-Thy1.2, APC–anti-IFN-γ, and PE–anti-IL-17. Intracellular and intranuclear staining was performed as described previously (15 (link)). For macrophages treated with 2-D-gal in vitro, cells were stained with Bio-ICAM followed by streptavidin eFluor 450 (eBioscience) and APC–anti-CD11b, FITC–anti-CD80, and PE–anti-CD86. 2D2 CD4 T cells were identified by staining with APC–anti-CD4, PE/Cy7–Vβ11. DQ-Ovalbumin (DQ-OVA, Invitrogen) was detected in FITC channel. For macrophages loaded with Eα-GFP peptides, cells were stained with bio-YAe (eBioscience), followed by streptavidin eFluor 450 (eBioscience) and APC–anti-CD11b (Biolegend).
To determine the degree of ERK1/2 intracellular signaling, we performed phospho-flow studies according to the protocol from BD Biosciences. Intracellular pERK1/2 was stained with Rabbit anti-ERK1 (T202/Y204)/ERK2 (T185/Y187) (R&D systems), followed by Alexa488–goat anti-rabbit IgG (Invitrogen).
Data were acquired on a BD LSRII flow cytometer and analyzed using FlowJo software (Tree Star, Inc.).
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2

Quantifying Antigen-Specific B Cells by Flow Cytometry

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Single cell suspensions of the spleen and bone marrow were prepared by mashing or flushing the organs, respectively44 (link). For phosphoflow staining, splenocytes were stimulated at 37 °C for 5 min with a F(ab’)2 goat anti-mouse IgG (H + L) antibody (from Jackson immunosearch, 10 μg/ml). Cells were then fixed with ice-cold methanol on ice for 30 min before staining with the relevant antibodies. HEL-specific B cells were detected by staining with either recombinant HEL (40 ng/ml, Sigma-Aldrich) followed by a rabbit anti-HEL biotinylated (AbCam) and streptavidin eFluor450 (eBioscience) or 1 μg/ml of biotinylated HEL (conjugation with the EZ-link Sulfo-NHS-biotin kit from Pierce following the manufacturer’s instructions) and streptavidin eFluor450 (eBioscience). For all experiments, the gating of HEL-binding cells was set up based on control staining with a biotinylated rabbit anti-HEL and streptavidin eFluor450, or streptavidin eFluor450 alone when biotinylated HEL was used. For the analysis, the HEL+ gates were drawn on the condition minus HEL and applied to all other samples.
FACS analysis was performed on a BD LSR Fortessa (BD biosciences) and data were analysed with the Flowjo software (TreeStar, Ashland, OR). All antibodies used are described in Supplementary Table 2.
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3

Multicolor Immunofluorescence Imaging of Tissue Sections

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Bones were embedded in Tissue‐Tek OCT compound (Sakura Finetek) and cooled with liquid nitrogen. Sections of 8 mm were made with a cryostat (Leica) using the CryoJane Tape‐Transfer System (Leica). Sections were fixed in acetone, air‐dried, and blocked with CAS‐Block (Thermo Fisher Scientific) for 15 min, and subsequently stained with antibodies in PBS/1% BSA. Primary antibodies were stained O/N at 4⁰C, followed by secondary antibodies for 1–2 h at room temperature. The following antibodies were used: CD8α‐Alexa Fluor 647 (53‐6.7, Biolegend), CD144/VE‐cadherin biotin (BV13, Biolegend), CD31/PECAM‐1 biotin (MEC 13.3, BD Pharmingen), CD69 (R&D systems), Donkey‐Anti‐Goat IgG Alexa Fluor 568 (Invitrogen), and Streptavidin eFluor 450 (eBioscience). Nuclei were stained using Helix NP green (eBioscience). Sections were viewed using a SP8 confocal (Leica). Images were further processed in LASX (Leica) and Fiji Imaging Software.
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4

Identifying ABCG2+ Stem Cells

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The cells were harvested and suspended with RPMI1640 containing 2% fetal bovine serum and stained with biotin-conjugated anti-human ABCG2 (13-8888, eBioscience, USA) for 30 min. After being washed twice in 1× PBS, the cells were stained with the following cocktail of markers: anti-human MSCA-1-APC, anti-human ALDH, and Streptavidin eFluor®450 (17-9669, 41-9595, 48-4317, eBioscience). Cells were then washed, resuspended in RPMI1640 with 2% fetal bovine serum, and analyzed by flow cytometry (FACSCalibur, BD). At least 106 events were acquired and analyzed using FlowJo software.
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5

Characterization of Ferret Immune Cells

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Flow cytometry assays were performed as previously described [18 (link)]. Briefly, cells were blocked with Fc blocking antibody (Clone 2.4G2, Cat Nu 553142, BD Biosciences, San Jose, CA) and stained with monoclonal antibodies recognizing ferret CD4 (clone 02 –PE, Sino Biological Inc., Beijing, China), or cross-reacting with ferret CD8 (clone OKT8 –eFluor 450, eBioscience, San Diego, CA), CD11b (clone M1/70 –FITC, eBioscience), anti-MHC class II (clone CAT82A –unconjugated, Kingfisher Biotech, St. Paul, MN), CD3 (clone PC3/188A –FITC and AlexaFluor 647, Santa Cruz Biotechnology, Santa Cruz, CA), and CD79a (clone HM47 –PerCP-Cy5.5, eBioscience). The anti-MHC class II antibody was biotinylated (cat# 130-093-385, Miltenyi Biotec, San Diego, CA) prior to use and detected with streptavidin-eFluor 450 (eBioscience). Unstained cells and isotype controls (eBioscience, San Diego, CA) were included for all antibodies. Data were acquired using a FACSCanto II flow cytometer (BD Bioscience, San Jose, CA), and analyzed using FlowJo software (Tree Star, Ashland, OR).
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6

Mammary Cell Immunophenotyping Protocol

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Single mammary cells were then incubated with the following primary antibodies: CD31-biotin (clone 390, eBioscience), CD45-biotin (clone 30-F11, eBioscience), Ter119-biotin (clone Ter119, eBioscience), EpCAM (clone G8.8, BioLegend), CD49f (clone GoH3, BioLegend), CD49b (HMα2, BioLegend), and Sca1 (clone D7, BioLegend). Biotin conjugated antibodies were detected with Streptavidin-eFluor450 (eBioscience). Cells were then filtered through a 30-μm cell strainer (Partec) and incubated with 4’, 6-diamidino-2-phenylindole (DAPI; Invitrogen) and were analysed by using an LSRII (Becton Dickinson), or sorted on a FACSAria II (Becton Dickinson). The gating strategy to select luminal and basal subsets is shown in Supplementary Fig. 5a. Flow cytometry data were analysed using FlowJo (version 10. Tree Star Inc.)
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7

Immunophenotyping of FLT3-ITD AML Cells

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MNC from FLT3-ITD AML BM samples were stained for lineage markers using biotinylated antibodies: CD4 (RPA-T4; Biolegend), CD8a (RPA-T8; Biolegend), CD19 (HIB19; Biolegend), CD41 (MEM-06; Sigma), CD235alpha (HIR2; eBioscience), CD56 (B159; BD Pharmingen). Cells were then stained with the following fluorochrome-conjugated antibodies: CD34-FITC (581; BD Pharmingen), CD90-PE (5e10; BD Pharmingen), CD33-PC5.5 (D3HL60, Beckmann Coulter), CD45RA-APC Cy7 (H1100; BD Pharmingen), Streptavidin-eFluor 450 (eBioscience), CD38-APC (HB7; BD Pharmingen), CD45-APC-Cy7 (2D1; BD Pharmingen). PI was added as live/dead marker. Cell sorting was performed on a FACS Aria II (Becton Dickinson, Heidelberg, Germany). Sorting purity of >98% was routinely obtained.
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8

Flow Cytometry Immunophenotyping Panel

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The following mAbs from eBioscience were used: anti-CD44 (IM7), anti-CD4 (RM4–5), anti-CD8 (53–6.7), anti-CD62L (MEL-14), anti-B220 (RA3–6B2), anti-PD-1 (RMP1–30), anti-CD127 (A7R34), anti-GL-7 (GL-7), anti-CD40L (MR1), anti-Eomes (Dan11mag), anti-CD107α (1D4B) and anti-CD107β (ABL-93). From BioLegend: anti-KLRG1 (2F1), anti-CD3 (145–2C11), anti-SLAM (TC15–12F12.2); and from BD Biosciences: anti-Bcl6 (K112–91), anti-CXCR5 (RF8B2), anti-ICOS (7E.17G9), anti-FAS (Jo2), anti-CD138 (281–2), anti-CD25 (3C7), anti-IFN-γ (XMG1.2), anti-IL-2 (JES6–5H4), anti-TNF-α (MP6-XT22), anti-FoxP3 (MF23) and anti-T-bet (O4–46). Biotin conjugates were visualized by streptavidin-PE-Cy7 or streptavidin-eFluor 450 (eBioscience). Where possible, cells were stained in the presence of anti—CD16/CD32 block (2.4G2; kind gift from Louis Boon, Bioceros, Utrecht, The Netherlands) and dead cells were excluded by staining with LIVE/DEAD Fixable Near-IR Dead Cell Stain Kit (Invitrogen).
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9

Multiparametric Flow Cytometry of Adipose Tissue

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The primary antibodies used were Alexa Fluor 647-anti-VE-Cadherin (BV13) (Biolegend); APC-anti-CD31/PECAM-1 (MEC13.3), APC-eFluor 780-anti-CD45 (30-F11), APC-eFluor 780-anti-Ter119 (Ter119), biotin-anti-PDGFRα (APA5), biotin-anti-PDGFRβ (APB5), and eFluor 660-anti-Ki-67 (SolA15) (all from eBioscience); anti-Lepr and anti-fatty acid binding protein 4 (FABP4) (all from R&D systems); anti-Osx (Abcam); anti-Osteocalcin (mOC1–20 and R21C-01A) and anti-DMP-1 (all from TAKARA); anti-Perilipin (D1D8) (Cell Signaling); anti-Sox9 (Millipore). The secondary antibodies used were Alexa Fluor 647 donkey anti-goat IgG, Alexa Fluor 488 donkey anti-goat IgG, Alexa Fluor 488 donkey anti-rat IgG, and Alexa Fluor 633 goat anti-rabbit IgG (all from Molecular probes); Streptavidin eFluor 450 (eBioscience). Alexa Fluor 488-anti-GFP (Molecular Probes) was used for enhancement of the Nes-GFP signal. Nuclei were stained with Hoechst 33342 or DAPI (4',6-diamino-2-phenylindole) (all from Sigma-Aldrich). Lipid droplets were stained with BODIPY 493/503 (Molecular Probes).
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10

Comprehensive Immune Cell Profiling

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The following antibodies were used in this study: anti-Ly6A/E (Sca1) (D7), anti-CD48 (HM48-1), anti-CD41 (MWReg30), anti-CD45.2 (104), anti-CD45.1 (A20), anti-CD4 (GK1.5), anti-CD8a (53-6.7), anti-B220 (RA3-6B2), anti-Ki-67 (SolA15), anti-FcRII/III (93) and anti-Ter119 (TER-119) were all from eBioscience. Anti-CD150 (TC15-12F12.2), anti-CD117 (2B8), anti-CD11b (M1/70), anti-CD31 (MEC13.3), anti-CD144 (BV13) and anti-CD34 (MEC14.7) were from Biolegend. Anti-Lineage panel cocktail (TER-119, RB6-8C5, RA3-6B2, M1/70, 145-2C11 at 1:50 dilution) was from BD Biosciences. Streptavidin eFluor 450 and APC eFluor 780 from eBioscience and streptavidin BV 570 from Biolegend were used for biotinylated antibodies. Unless otherwise specified, all antibodies and streptavidin cocktails were used at a 1:100 dilution.
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