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2 protocols using thermostable ampligase

1

Quantum Dot-based Single-molecule Assay

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All oligonucleotides were synthesized and HPLC purified by Sangon Biotechnology Co. Ltd. (Shanghai, China). Thermostable Ampligase was obtained from Epicenter Technologies (Madison, WI, U.S.A.), exonuclease I (Exo I) and exonuclease III (Exo III) were purchased from New England Biolabs (Ipswich, MA, U.S.A.), magnesium chloride (MgCl2), ammonium sulfate (NH4)2SO4, bovine serum albumin (BSA), trolox, glucose oxidase, d-glucose, and catalase were obtained from Sigma-Aldrich Company (St. Louis, MO, U.S.A.). The streptavidin-coated quantum dots with the maximum emission at 605 nm (Qdot 605 ITK) were obtained from Life Technologies (Eugene, Oregon, U.S.A.). All other reagents were of analytical grade and used just as received without further purification. The ultrapure water was prepared by a Millipore filtration system (Millipore, Milford, MA, U.S.A.).
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2

Thermostable Ampligase-based DNA Detection

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Thermostable Ampligase was purchased from Epicenter Technologies (USA). Bst DNA polymerase large fragment was obtained from New England Biolabs (USA). HPLC-purified DNA targets, probes and primers used in this study were purchased from Integrated DNA Technologies (USA). The betaine was obtained from Sigma-Aldrich (Shanghai, China). The dNTPs were purchased from Takara Biomedical Technology Co., Ltd. (Beijing, China). SYBR Green I (20 ng μL−1 stock solution in DMSO) was obtained from Zhishan Biotechnology Co., Ltd. (Xiamen, China). All the solutions were prepared with sterilized and deionized water. The sequences of oligonucleotides were listed in Table S1 (see in ESI).
The ligation reaction was carried out in a T100 Thermal Cycler (Bio-Rad, USA). The real-time fluorescence signal was monitored with the StepOne Real-Time PCR System (Applied Biosystems, USA).
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