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3 protocols using anti lysozyme c

1

Recombinant Interferons and Antibodies for EV71 Research

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Recombinant human IFN-α2b was purchased from Sinobioway Medicine (Tianjin, China). Recombinant human IFN-λ1 was purchased from Novoprotein (Shanghai, China). Recombinant murine IFN-λ2 was purchased from PeproTech (Rocky Hill, NJ, USA). Recombinant human IFN-γ (catalog no. 285-IF) was obtained from R&D Systems (Minneapolis, MN, USA). Lipofectamine 2000 was purchased from Invitrogen (Carlsbad, CA, USA). Rabbit anti-EV71 VP1 antibody was obtained from Abnova (Taipei, Taiwan). Rabbit anti-TLR3 and anti-IL-28+IL-29 antibodies were purchased from Abcam (Cambridge, United Kingdom). Rabbit anti-IRF1 antibody was obtained from Cell Signaling Technology (Beverly, MA, USA). Rabbit antibodies to β-actin and EV71 3C were purchased from ABclonal Technology (Wuhan, China). Mouse anti-glyceraldehyde-3-phosphate dehydrogenase (anti-GAPDH) was purchased from Proteintech Group (Rosemont, IL, USA). Mouse monoclonal anti-dsRNA J2 antibody was obtained from Scicons (Budapest, Hungary). Rabbit anti-dsRNA (J2) was purchased from Absolute Antibody (Wilton, United Kingdom). Mouse anti-MUC2, anti-lysozyme C, and anti-ChrA were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Poly(I·C) was obtained from InvivoGen (San Diego, CA, USA).
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2

Immunohistochemical Analysis of Tissue and Organoid Samples

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For light microscopy, tissues and organoids were xed for 16 h in 10% neutral buffered formalin at 4 °C.
The tissues were embedded in para n and cut into 5-μm-thick sections. Sections were stained with hematoxylin and eosin (H&E) or subjected to immunohistochemistry. Organoids were embedded in Tissue-Tek ® O.C.T. Compound (Sakura Finetek), frozen at -20 °C, and cut into 10-µm-thick sections. For immunohistochemistry, para n sections were prepared by boiling in 10 mM citrate buffer pH 6.0 for 15 min. After blocking with 1% bovine serum albumin, sections were incubated for 16 h at 4 °C with the following primary antibodies: anti-lysozyme C (1:200, goat polyclonal, Santa Cruz Biotechnology); antiproliferating cell nuclear antigen (PCNA, 1:100, mouse monoclonal, Dako); anti-5-mC (1:300, rabbit monoclonal, Cell Signaling Technology); and anti-H3K4, 9, 27, 36, and 79me3 (1:300, rabbit monoclonal, Cell Signaling Technology). Before incubation with secondary antibodies, the tissues were washed to remove the unbound antibodies. The sections were then incubated with secondary antibodies (1:1000 dilution; Alexa Fluor 488 and/or Alexa Fluor 555, Invitrogen) for 1 h at 25 °C and mounted using UltraCruz™ Mounting Medium with DAPI (Santa Cruz Biotechnology). The samples were observed under a uorescence microscope (Axioskop 2 plus or Apotome. 2, Carl Zeiss).
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3

Immunohistochemical Analysis of Tissue and Organoid Samples

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For light microscopy, tissues and organoids were xed for 16 h in 10% neutral buffered formalin at 4 °C.
The tissues were embedded in para n and cut into 5-μm-thick sections. Sections were stained with hematoxylin and eosin (H&E) or subjected to immunohistochemistry. Organoids were embedded in Tissue-Tek ® O.C.T. Compound (Sakura Finetek), frozen at -20 °C, and cut into 10-µm-thick sections. For immunohistochemistry, para n sections were prepared by boiling in 10 mM citrate buffer pH 6.0 for 15 min. After blocking with 1% bovine serum albumin, sections were incubated for 16 h at 4 °C with the following primary antibodies: anti-lysozyme C (1:200, goat polyclonal, Santa Cruz Biotechnology); antiproliferating cell nuclear antigen (PCNA, 1:100, mouse monoclonal, Dako); anti-5-mC (1:300, rabbit monoclonal, Cell Signaling Technology); and anti-H3K4, 9, 27, 36, and 79me3 (1:300, rabbit monoclonal, Cell Signaling Technology). Before incubation with secondary antibodies, the tissues were washed to remove the unbound antibodies. The sections were then incubated with secondary antibodies (1:1000 dilution; Alexa Fluor 488 and/or Alexa Fluor 555, Invitrogen) for 1 h at 25 °C and mounted using UltraCruz™ Mounting Medium with DAPI (Santa Cruz Biotechnology). The samples were observed under a uorescence microscope (Axioskop 2 plus or Apotome. 2, Carl Zeiss).
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