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5 protocols using oligo dt 12 18 primer

1

Quantitative RT-PCR Analysis of BMMCs

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Total RNA was extracted from BMMCs using Trizol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. The first strand cDNA was reverse-transcribed from 1 µg of total RNA by using oligo (dT)12–18 primer (Takara Bio, Inc., Otsu, Japan). The reaction mixture was amplified with the oligonucleotides specific for mast cell protease (MCP)-6, PPAR γ, and β-actin using ABI 7500 Real-Time PCR System and SYBR-Green PCR master mix (Takara). Specific primer sequences are as follows: for MCP-6: sense 5′-CCACTGGTCTGCAAAGTGAA-3′ and antisense 5′-CAGAGGACAAGGAAGGCAAG-3′; for PPAR γ: sense 5′-TGACACAGAGATCGCATTCTGG-3′ and antisense 5′- ACA GAC ACG ACA TTC AAT TGC C-3′; for β-actin: sense 5′-CCCATCTACGAGGGCTAT-3′ and antisense 5′-TGTCACGCACGATTTCC-3′.
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2

Quantitative RT-PCR Analysis of Stem Cell Genes

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Total RNA purified from ES and TS cells was reverse transcribed using Superscript II (TaKaRa, Otsu, Japan) and an oligo(dT)12–18 primer (TaKaRa) in a total volume of 20 μl. Quantitative real-time RT-PCR was performed using SYBR Premix Ex Taq (Perfect Real Time, TaKaRa). The PCR mixture consisted of 2 × SYBR Premix Ex Taq, 10 μM forward and reverse primers, and template cDNA in a total volume of 12.5 μl. The cocktail was activated by heating at 95°C for 10 sec. The subsequent PCR reaction was carried out at 95°C for 5 sec and 60°C for 30 sec for 40 cycles in a LightCycler480 (Roche). PCR amplification was performed using the following primer sets:
p53: 5′-GTCACGCTTCTCCGAAGACT-3′
and 5′-GTCCATGCAGTGAGGTGATG-3′
Bax: 5′-GCTGGACACTGGACTTCCTC-3′
and 5′-GAGGACTCCAGCCACAAAGA-3′
Bcl-2: 5′-AGTACCTGAACCGGCATCTG-3′
and 5′-GCTGAGCAGGGTCTTCAGAG-3′
Oct4: 5′-CCAATCAGCTTGGGCTAGAG-3′
and 5′-CTGGGAAAGGTGTCCCTGTA-3′
Nanog: 5′- ATGCCTGCAGTTTTTCATCC-3′
and 5′- GAGGCAGGTCTTCAGAGGAA-3′
Sox2: 5′- GAGTGGAAACTTTTGTCCGAGA-3′
and 5′- GAAGCGTGTACTTATCCTTCTTCAT-3′
Stella: 5′- AGCCGTACCTGTGGAGAACAA-3′
and 5′-TCTTTCAGCACCGACAACAAA-3′
Fgf5: 5′-CTCAGGGGATTGTAGGAATACGAGGA-3′
and 5′-GGATCGCGGACGCATAGGTATTATAG-3′
Gapdh: 5′-AATGCATCCTGCACCACCAA-3′
and 5′-GTGGCAGTGATGGCATGGAC-3′
The Gapdh gene was used to standardise the data.
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3

Quantitative Gene Expression Analysis

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Total RNA was extracted from cultured cells using TRIzol® reagent (Invitrogen, NY). Single-stranded cDNA was generated from total RNA, using M-MLV reverse transcriptase and oligo (dT) 12–18 primers (Takara, Japan). The real-time quantitative PCR reaction was performed with the SYBR green detection system (Bio SYBR Green Master Mix, Takara, Japan). GAPDH served as an endogenous control. All cycle threshold (ct) values were determined in real time using CFX96™ Real-Time PCR Detection (Bio-rad, CA). The primer pairs for each target gene is listed in Supplementary Table 2.
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4

Quantitative Analysis of Gene Expression

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Gene expression was determined by real-time quantitative PCR and calculations were performed using the ΔΔCT method. Total RNA was isolated from 80 oocytes using Dynabeads mRNA DIRECT kit (Invitrogen, USA), and subjected to cDNA synthesis with a cDNA synthesis kit using Oligo (dT) 12–18 primers (Takara, Japan). SOD, GSH-Px, ASH1L, SETDB1 and EZH2 were amplified using the specific primers (Sangon, China) (Supplementary Table S1). SYBR Green Real-time PCR Master Mix kit (Toyobo, Japan) was used with a Step One Real-time PCR System (Applied Biosystems, USA) under the following conditions: 95°C for 10 min, 40 cycles of 95°C for 15 s, and 60°C for 1 min.
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5

Total RNA Extraction and Reverse Transcription

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Total RNA was extracted from the liver samples by using Trizol reagent (Invitrogen, Carlsbad, CA, USA) according to manufacturer instructions. The quantity and purity of total RNA was evaluated using spectrophotometry at 260, 280, and 230 nm. The RNA integrity was evaluated by 1.5% agarose gel electrophoresis. Reverse transcription of total RNA was performed using Oligo-dT 12-18 primers according to manufacturer instructions (TaKaRa, Biotechnology Co. Ltd., Dalian, China). The reactions were performed in 25 µL volumes that consisted of 1.0 µL 1 µg/µL total RNA, 50 U Superscript III reverse transcriptase (Invitrogen Biotechnology Co. Ltd., Shanghai, China), 40 U RNAse inhibitor (Invitrogen Biotechnology Co. Ltd., Shanghai, China), 0.5 mM dNTPs, and 100 ng random hexamer primers (Invitrogen Biotechnology Co. Ltd., Shanghai, China).
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