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Vivaspin polyethersulfone membrane

Manufactured by Sartorius

The Vivaspin polyethersulfone membrane is a laboratory filtration device designed for sample preparation and concentration. It features a polyethersulfone membrane that allows the selective separation and concentration of molecules based on their size. The core function of this product is to facilitate sample preparation and concentration tasks in various laboratory applications.

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3 protocols using vivaspin polyethersulfone membrane

1

Native Nanoelectrospray Analysis of VLPs

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In order to enable native nES-based analysis of VLPs, employed storage buffers (often including additional salt components or stabilizing agents) had to be replaced by a volatile electrolyte solution. Else, these additional sample components were shown to lead to an increased peak heterogeneity of the analytes of interest and, in nES GEMMA, an elevated baseline resulting from clustering of small, non-volatile molecules during the nES process [55 (link)]. As in previous studies, we opted for ammonium acetate and carried out removal of small, buffer-associated sample components via spin filtration [42 (link)] employing 10 kDa MW cutoff filters (Vivaspin-polyethersulfone membrane, Vivacon-regenerated cellulose membrane-both from Sartorius or centrifugal filters-polyethersulfone membrane, VWR, Vienna, Austria). Between 3 and 5 filtration steps were necessary to remove non-volatile additional sample components. Sample concentration for measurements was typically well below 1 mg/mL protein content (based on originally determined values and sample dilution).
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2

Protein Purification and Oxidation

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The culture supernatants containing the secreted proteins were centrifugated (1 h, 30,000 × g, 10°C) and sterilized by filtration (0.22 µm; Express Plus; Merck Millipore). The supernatants were equilibrated to pH 7 with 0.5 mM NaOH, and the proteins were purified using two ion exchange chromatographies (Fig. S1): first, an anion exchange on DEAE Sephadex A-25 (Cytiva) and a cation exchange on CM Sephadex A-25 (Cytiva) for proteins not retained on the anion exchanger. Both resins were initially equilibrated with 20 mM sodium phosphate buffer (pH 7). Elution of the secreted proteins was performed with 1 M NaCl. Fractions from both anion and cation exchangers were pooled, desalted on Sephadex G-25 (PD-10 Desalting Columns, Cytiva) in 50 mM sodium acetate (pH 5.2), and concentrated using Vivaspin polyethersulfone membrane (3 kDa cutoff, Sartorius). Protein concentrations were determined using the Bradford method (Bio-Rad), and the secretomes were used immediately. Secreted proteins (50 µg) were incubated 30 min with 1 mM hydroxylamine, desalted on Sephadex G-25 (PD SpinTrap, Cytiva), then incubated with 100 mM of H218O2 (Sigma-Aldrich) for 1 h in the dark, then desalted. Initial concentration of commercial H218O2 was estimated to be ∼450 mM using FOX method (51 ). Protein concentrations were determined, and the samples were stored at −20°C.
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3

Secretome Analysis of P. brumalis

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The water extracts collected after 4, 10 and 15 days of culture were filtered using 0.22-μm pore-size polyethersulfone membranes (Vivaspin, Sartorius), diafiltered with 50 mM sodium acetate (pH 5.0) and concentrated using a Vivaspin polyethersulfone membrane with a 10-kDa cutoff (Sartorius). LC–MS/MS analysis of the secretomes was performed as described by Navarro et al. [66 (link)]. Briefly, 10 μg of proteins was in-gel digested using a standard trypsinolysis protocol. For protein identification, online analysis of peptides was performed with a Q-exactive mass spectrometer (Thermo Fisher Scientific), using a nanoelectrospray ion source. MS/MS data were queried against the catalog of predicted proteins from the P. brumalis genome, and an in-house contaminant database, using the X!Tandem software (X!Tandem Cyclone, Jouy en Josas, France). Peptides that matched with an E value < 0.05 were parsed with the X!Tandem pipeline software. Proteins identified with at least two unique peptides and a log (E value) < − 2.6 were validated.
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