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9 aminoacridine hydrochloride monohydrate 9 aa

Manufactured by Merck Group
Sourced in United States, Germany, United Kingdom

9-aminoacridine hydrochloride monohydrate (9-AA) is a chemical compound used in various research and laboratory applications. It is a crystalline solid with the molecular formula C₁₃H₁₁N₂·HCl·H₂O. The core function of 9-AA is to serve as a reagent or intermediate in chemical synthesis and analysis procedures.

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3 protocols using 9 aminoacridine hydrochloride monohydrate 9 aa

1

MALDI Matrix Preparation and Calibration

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MALDI matrices, including 2.5-dihydroxybenzoic acid (DHB) and 9-aminoacridine hydrochloride monohydrate (9-AA), were purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium trifluoroacetate (NaTFA, Sigma–Aldrich) at 0.1 mg mL−1 (ACN/H2O 50:50 [v/v]) was used for external calibration before each analysis.
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2

MALDI-FT-ICR-MSI Tissue Imaging Protocol

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The MALDI-FT-ICR-MSI analyses were performed as previously described40 (link)–42 (link). In brief, FFPE heart samples were cut into 5 μm sections on a microtome (Leica) and mounted onto indium-tin-oxide coated conductive glass slides (Bruker Daltonik, Bremen, Germany). The FFPE sections were incubated at 60 °C for one hour and deparaffinized in xylene (twice for 8 min). The matrix solution consisted of 10 mg/ml 9-aminoacridine hydrochloride monohydrate (9-AA) (Sigma-Aldrich, Germany) in water/methanol 30:70 (v/v). SunCollect sprayer (Sunchrom, Friedrichsdorf, Germany) was used for matrix application. The flow rates were 10, 20, 30 and 40 μl/min, respectively, for the first four layers. The other 4 layers were performed at 40 μl/min. The MALDI-MSI measurement was performed on a 7 T Solarix XR FT-ICR mass spectrometer (Bruker Daltonik, Bremen, Germany) in negative ion mode using 50 laser shots per spot at a frequency of 1000 Hz. The MALDI-MSI data were acquired over a mass range of m/z 75−1000 Da with 50 μm lateral resolution. MALDI mass spectra were root mean square normalized using SCiLS Lab (Bruker Daltonik, Bremen, Germany), and exported as imzML files. MS peak annotation was performed with Human Metabolome Database43 (link) (http://www.hmdb.ca/) and METASPACE44 (link) (https://metaspace2020.eu/).
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3

MALDI-MS Imaging of Lipids and Metabolites

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N-(1-Naphthyl)
ethylenediamine dihydrochloride (NEDC) (Sigma-Aldrich, Gillingham,
UK) matrix was applied to sections at 7 mg/mL in 70% methanol (v/v).
The spray parameters were the same as for the lipids with the only
difference that the nozzle temperature was set to 85 °C. 9-Aminoacridine
hydrochloride monohydrate (9AA) (Sigma-Aldrich, Gillingham UK) matrix
was applied at 7 mg/mL in 70% ethanol (v/v) using the SunCollect (SunChrom,
Friedrichsdorf, Germany). Twenty layers were applied with a flow rate
of 40 μL/min and a Z offset of 25 mm. The velocity was set at
1250 mm/min combined with a line distance of 2 mm.
Lipids were
detected using both positive and negative ion polarities and metabolites
only in the negative mode using a Bruker RapifleX MALDI Tissue-typer
instrument operating in reflectron mode (Bruker Daltonik GmbH, Germany)
and an Orbitrap Elite hybrid ion trap mass spectrometer (Thermo Fisher
Scientific, Bremen, Germany) (see the Supporting Information).
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