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Prism 7700 sequence detector

Manufactured by Thermo Fisher Scientific
Sourced in China

The PRISM 7700 Sequence Detector is a real-time PCR instrument designed for quantitative gene expression analysis. It utilizes fluorescent detection technology to accurately measure DNA amplification during the PCR process. The instrument provides precise quantification of target sequences in a variety of sample types.

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6 protocols using prism 7700 sequence detector

1

HTLV-1 Proviral Tax DNA Quantification

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DNA was extracted from the cells using QIAamp DNA Blood Mini Kit (Qiagen). HTLV-1 proviral tax DNA load was measured using real-time PCR with an ABI PRISM 7700 Sequence Detector (life technologies), as previously described (Oh et al., 2005 (link)).
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2

Quantification of Murine ADP and β-actin mRNA

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Total RNA was extracted from subcutaneous adipose tissue using TRIzol (Takara Biotechnology, Dalian, China). Total RNA with A260:A280 ratio above 1.85 was used for real-time PCR analyses. First strand cDNA was reverse-transcribed from 1 μg of total RNA by using a SuperScript first-strand synthesis kit (Takara) according to the manufacturer’s instruction. Quantification of murine ADP and β-actin mRNA was performed with a PRISM 7700 sequence detector (Life Technologies, Shanghai, China), by using TaqMan probe. The primers were designed by Takara Biotechnology. PCR cycling conditions were as follows: 2 min at 50 °C, 10 min at 95 °C followed by 40 cycles of denaturation at 95 °C for 15 s, and annealing and extension at 60 °C for 1 min. Amplification was performed in a final volume of 25 µL, and each sample contained 3 µL cDNA (equivalent to 100 ng of RNA), 900 nmol of specific primers, 225 nmol of the probe, and a master mix made from quantitative PVR core kit (Takara). The mean value of Ct for each sample was used for data analysis. All samples were normalized to the β-actin values and the results expressed as fold changes of Ct changes of Ct value relative to controls by using the 2−ΔΔ Ct formula.
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3

Real-time PCR analysis of Lck expression

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DN thymocytes, DP thymocytes, SP thymocytes and splenic T cells were purified by flow cytometry from mouse thymus and spleen, and used to extract total RNA using NucleoSpin kits (BD Biosciences Clontech, Palo Alto, CA). One μg of total RNA was reverse-transcribed with random hexamers by using the SuperScript first-strand synthesis system for RT-PCR (Invitrogen, Carsbad, CA). Each PCR reaction contained first-strand cDNA corresponding to 25 ng of RNA, TaqMan universal PCR master mix (Invitrogen, Carsbad, CA), a set of primers for detecting Lck-PROX (5′taa ggg gta ctg gga aca aca-3′, 5′-ctc tga gct caa gga act gga-3′), or Lck-DIST (5′-atg ttg ggg cga gtg gct tag g-3′, 5′-atg gga tag tgg cag ttt tca-3′) or actin (5′-atg cca aca cag tgc tgt ctg gtg g-3′, 5′-ctg atc cac atc tgc tgg aag gtg-3′). Real-time detection of PCR products was performed by a PRISM 7700 sequence detector (Invitrogen, Carsbad, CA). RT-PCR amplified lck product was normalized to actin product for each sample. Reactions were in triplicate for each sample.
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4

Quantitative Analysis of Gene Expression

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RNA was isolated using the RNeasy kit (Qiagen). For qPCR reactions, 1 µg of total RNA was used for a reverse transcriptase reaction (Superscript II, Invitrogen). The resulting cDNA was used as a template for qPCR (ABI PRISM 7700 Sequence Detector) in the presence of SYBR-green (Invitrogen) to label the product. The relative amounts of cDNA were compared to Actin to correct for the amount of total cDNA. Average values and standard deviations were calculated as indicated in Figure legends and compared to the expression values in control mice (normalized to the value of 1). We used the following primers:
Trp53 A Fw TGTTATGTGCACGTACTCTCC, Trp53 A Rv GTCATGTGCTGTGACTTCTTG
Trp53 B Fw TCCGAAGACTGGATGACTG, Trp53 B Rv AGATCGTCCATGCAGTGAG,
Mad2l1 A Fw AAACTGGTGGTGGTCATCTC, Mad2l1 A Rv TTCTCTACGAACACCTTCCTC,
Actin A Fw CTAGGCACCAGGGTGTGATG, and Actin A Rv GGCCTCGTCACCCACATAG.
Illumina expression microarrays were performed as described previously (Foijer et al., 2014 (link)).
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5

Quantifying Inflammasome Genes in Mesothelioma

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To determine the effect of XMD8-92 treatment on constitutive inflammasome related genes in mesothelioma cells, total RNA was extracted using the Qiagen RNeasy Plus Mini kit as per the manufacturer’s instructions (Qiagen, Germantown, MD). One μg of RNA from each sample was reversed transcribed using Promega AMV Reverse Transcriptase Kit (Promega) as previously reported [4 (link)]. Specific gene expression was quantified using a primer and probe mixture (Applied Biosystems) and 7700 Sequence Prism Detector (Perkin Elmer, Applied Biosystems) [4 (link)].
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6

qRT-PCR Gene Expression Profiling

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Total RNA was prepared using an RNeasy plus mini kit according to the manufacturer’s protocol (Qiagen, Valencia, CA) as described previously [21 (link)]. Total RNA (1μg) was reverse-transcribed with random primers using the Promega AMV Reverse Transcriptase kit (Promega, Madison, WI) according to the recommendations of the manufacturer. Gene expression was quantified by TaqMan Real Time Q-PCR using the 7700 Sequence Prism Detector (Perkin Elmer Applied Biosystems, Foster City, CA) as described previously [23 (link)]. Duplicate or triplicate assays were performed with RNA samples isolated from at least 2 independent experiments.
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