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609 protocols using rapamycin

1

Rapamycin Preparation and Treatment

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Rapamycin (LC laboratories) was dissolved in 10% Tween-20/90% ethanol, and 20 h before assays, Rapamycin was added to conditioning plates or test plates at a final concentration of 100 μM. Control plates were prepared to contain the solvents at the same concentration as that in the Rapamycin-containing plates.
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2

Dietary Fat Induced Metabolic Changes

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Mice were placed on NCD (10% kcal fat; Research Diets D12450Bi) or HFD (45% kcal fat; Research Diets D12451i) starting at 4–6 weeks of age for 12 to 18 weeks. Mice were weighed weekly, and food consumption was tracked. Body composition, including body fat, lean mass, and fluid, was measured via TD-NMR using the Bruker Minispec Body Composition Analyzer. Energy expenditure, movement, VO2 max, VCO2 max, respiratory exchange ratio (RER), and food and drink consumption were measured using CLAMS metabolic cages, which was performed by the Metabolic Phenotyping Core. Serum was collected from mice treated with HFD for 0, 2 or 17 weeks and Leptin levels were measured via MAGPIX, using the mouse metabolic hormone panel (Millipore). For the rapamycin experiments, mice were placed on HFD for four weeks prior to administration of rapamycin, and then kept on HFD and intraperitoneally (i.p.) injected with rapamycin (LC Laboratories) three times per week for 10 weeks. rapamycin was prepared in a solution of 100% ethanol, 10% PEG400, and 10% Tween80 and was injected at 4 mg/kg based on body weight.
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3

Rapamycin Treatment Protocol for Longevity

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For rapamycin treatment, rapamycin (LC Laboratories, R-5000) was dissolved in DMSO and mixed into the media when preparing food vials. The rapamycin dose was 50 µM.
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4

Rapamycin-mediated Immunosuppression in Mice

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Mice were immunized with SRBCs on d0 as described and injected with 60µl Rapamycin solution (1.2 mg/ml Rapamycin (LC Laboratories, Woburn, MA, USA) in PBS + 5% PEG-400 + 5% Tween-20) / 10 g body weight on day 1, 2, 3, 4, 5, 6. Control mice were injected with vehicle only. Mice were sacrificed on day 7 and blood was collected.
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5

Rapamycin Administration in SD Rats

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A total of 117 SPF male SD rats at 8 to 10 weeks old were purchased from the Experimental Animal Center of Ningxia Medical University, with a body weight of (230-280) g. The animal care, use and surgical procedures were was approved by the Experimental Animal Ethics Committee of Ningxia Medical University and consistent with the health guidelines of the National Institute of Health for the Care and Use of Laboratory Animals. Rapamycin stock solution was prepared by dissolving 100 mg Rapamycin (LC Laboratories, USA, V900930) in 5 ml of 100% ethanol (20 mg/mL) and stored at -20°C. Before intraperitoneal injection, the stock solution was diluted with 5% Tween-80 and 5% polyethylene glycol 400 to a working solution with a nal concentration of 4% ethanol.
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6

Rapamycin and RU486 Metabolic Impact

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Rapamycin (LC laboratories) was prepared similar to RU486 food, at a concentration of 400 μM. Flies were treated with Rapamycin + RU486 or RU486 alone for 6 days before metabolic testing or sleep analysis.
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7

Abf1 Depletion from Nucleus

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At = 0, Abf1 was depleted from the nucleus by addition of rapamycin (LC Laboratories #R‐5000; dissolved to 2mM in DMSO), to a final concentration of 7.5 μM. For the = 0 time point, the same volume of DMSO instead of rapamycin was added and incubated for 90 min.
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8

Rapamycin Treatment Regimens in Mice

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One week after the first study ended, experimental groups (R1–R3) were treated with rapamycin (LC Laboratories) via i.p injections, according to the following schedules: R1 group received 1.5 mg kg−1 three times/week/every other week; R2 group was injected with 1.5 mg kg−1 week−1 per every week; and R3 group was administered 0.5 mg kg−1 three times/week/every other week. Treatment was continued for 11 months, and weight was measured every week. On the eighth day after the last treatment, mice were fasted overnight and sacrificed. Blood was collected at the end of the day before food was removed for overnight fasting. Next morning, fasted blood was collected and mice were sacrificed. Nonfasted and fasted plasma were prepared, accordingly, for biochemical analysis.
rapamycin (LC Laboratories, Woburn, MA, USA) was dissolved in ethanol at 15 mg mL−1 (stock) and then diluted to 0.15 mg mL−1 in PBS containing 5% Tween-80, 5% PEG 400 and 4% ethanol.
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9

Optimization of Cytotoxic Drug Treatments

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For MG132 or BAFA1 treatment, we plated 1 9 10 4 cells a well in a 96-well clear bottom black plate, allowed them to grow for 16-24 h, and then changed the culture medium to EMEM containing MG132 (ChemScene, Monmouth Junction, NJ, USA) or BAFA1 (Sigma-Aldrich, St. Louis, MI, USA). As a pilot experiment, we tested the viability of cells treated with MG132 (0.2-1 µM) or BAFA1 (8-15 nM) at several different concentrations to determine the appropriate concentration of each drug. On day 5 of drug treatment, the culture medium was replaced with regular EMEM that contained no drug. For VE co-treatment, cells were treated with 500 µM (+/À)-a-tocopherol (Fujifilm Wako Pure Chemical Corp). For rapamycin co-treatment, cells were treated with 10 nM rapamycin (LC Laboratories, Woburn, MA, USA).
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10

Multimodal Immunosuppression for Transplant

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Rabbit ATG (Genzyme; Boston, MA) was given intravenously (i.v.); slowly over 4 hours on days -3 and -1 before transplant and on days 6 and 13 post-transplant at doses of 10, 5, 5 and 5 mg/kg, respectively. Methylprednisolone was given immediately before each ATG infusion at doses of 5, 2.5, 2.5 and 2.5 mg/kg, respectively. Anti-IL-6R mAb (Actemra; Genetech, CA) was administered i.v. over 1 hour at 10 mg/kg on days -1, 6, 13 and 20, and then once every 4 weeks. Tacrolimus was given by intramuscular (i.m.) injection from day -3 to 14 (target whole blood trough levels: 10–15 ng/ml), followed by rapamycin (i.m.; LC Laboratories, Woburn, MA) from days 14 to 54 (target whole blood trough levels: 10–15 ng/ml), after which rapamycin was weaned slowly and discontinued completely on day 84. The immunosuppressive protocol is summarized in Figure 1.
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