The largest database of trusted experimental protocols

Iplex enzyme

Manufactured by Agena

The IPLEX enzyme is a laboratory product used for DNA and RNA manipulation. It functions as a DNA/RNA polymerase, catalyzing the synthesis of complementary DNA or RNA strands. The IPLEX enzyme is a versatile tool for various molecular biology applications, such as DNA amplification, reverse transcription, and DNA sequencing.

Automatically generated - may contain errors

2 protocols using iplex enzyme

1

Optimized iPLEX Extension Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Extension Primers were synthesized at Inqaba Biotechnical Industries Pty Ltd. Pretoria South Africa. They were diluted to a stock concentration of 500 µM. This stock was split into a four-tier concentration grouping of 7µM, 9µM, 11µM and 14µM according to extension primer mass from smallest to largest. This four-tier system was used for Oligovalidation and peak optimisation on the MALDI-TOF Then, the iPLEX extend was carried out with a final concentration of between 0.625 and 1.5 l µM for each extension primer, depending on the mass of the probe, iPLEX termination mix (Agena Biosciences) and 1.35µM iPLEX enzyme (Agena Biosciences) and conducted a two-step cycles program; 94 o C for 30 s followed by 40 cycles of 94 o C for 5 s, then followed 5 cycles of 52 o C for 5 s, and 80 o C for 5 s within the 40 cycles, then 72 o C for 3 min in the 40 cycles. The reaction was then desalted by addition of 6 mg resin to each well followed by mixing and centrifugation to settle the contents of the tube. The extension product was spotted onto a 96-well spectrochip before being flown in the MALDI-TOF (Matrix -Assisted Laser Desorption Ionisation Time of Flight) mass spectrometer (Agena Biosciences).
+ Open protocol
+ Expand
2

MassArray for MTB Resistance Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
MassArray was used to identify MTB and detect MTB resistance gene mutation sites. The anti-tuberculosis drugs and their corresponding gene resistance loci are shown in Table 1. Two PCR reaction systems were performed simultaneously. The reaction system contains HPLC H2O 0.8 μL, 10XPCR buffer with 20 mM MgCl2 0.5 μL, 25 mM MgCl2 0.4 μL, 25 mM dNTP Mix 0.1 μL, 0.5 μM Primer Mix 1 μL, PCR Enzyme 0.2 μL and 2 μL template DNA, in a final volume of 5 μ. The reaction program was: 95°C for 2 min; 95°C for 30s, 60°C for 30s, 72°C for 60s, for 45 cycles; 72°C for 5 min, hold at 4°C. Add 2 μL shrimp alkaline phosphatase (SAP) in each well, 37°C for 40 min, 85°C for 5 min, hold at 4°C. Add 2 μL iPLEX extension mix (nanopure water 0.62 μL, iPLEX buffer 0.2 μL, iPLEX termination mix 0.2 μL, extend primer mix 0.94 μL, and iPLEX enzyme 0.04 μL, Agena Bioscience, San Diego, CA) in each well. The reaction program was: 95°C for 30s; 95°C for 5 s, (52°C for 5 s, 80°C for 5 s, for 5 cycles), for 40 cycles; 72°C for 3 min, hold at 4°C.
The production was then carried out at Zhejiang Digena R&D Center, on a high-throughput MassARRAY platform with data analyzed using Typer 4.0 and plate manager 1.0 software. The quality of the test results was classified as No-Alleles, Low Probability, Aggressive, Moderate, Conservative.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!