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6 protocols using plan neofluar 10x 0.3 objective

1

Quantifying Sporozoite Gliding Motility

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To assess gliding motility, 5,000 sporozoites were resuspended in 1x PBS containing 5% FCS and 10 μg/mL of hmAb in a final volume of 20 μL. The resulting suspension was transferred to an 18-well slide (iBidi) and centrifuged at 400 g for 3 min at 4°C. The slide was then allowed to equilibrate at 37°C, 5% CO2 for 3 min in the incubation chamber (Incubation System S, Zeiss) of an inverted epifluorescence wide-field microscope (AxioObserver Z.1, Zeiss) equipped with a LED illumination system (Colibri2, Zeiss), a CCD camera (AxioCam MR, Zeiss) and controlled by the AxioVision software (version 4.8.2.0, Zeiss). Time-lapse movies were then recorded for 2–4 min at a rate of one image per second with an EC “Plan-Neofluar” 10x/0.3 objective (Zeiss) using a 470 nm LED and a matching filter cube (43HE, Zeiss) to excite and detect GFP and thus visualize sporozoites. Average sporozoite velocity over the first 2 min of the acquisition was determined using the MTrack2 plug-in from Fiji.38 (link)
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2

Comprehensive Aortic Atherosclerosis Characterization

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After mouse cardiac perfusion with PBS supplemented with 5 mM of EDTA, mouse hearts were harvested and fixed in 4% paraformaldehyde (PFA) for 24 h at 4 °C, incubated 24 h in PBS supplemented with 30% sucrose, embedded in OCT and cryopreserved at −70 °C.
Cryocut cross-sections (5 µm) of aortic roots were evaluated for conventional hematoxylin-eosin (HE) staining, 0.1% sirius red to detect collagen or 0.5% ORO to detect neutral lipids. Images were captured with a Zeiss Axiophot microscope with a Plan-NEOFLUAR 10x/0.3 objective (Zeiss, Oberkochen, Germany) and a DP70 camera (Olympus, Madrid, Spain). Polarized images were obtained using a Mirax digital slide scanner (3DHistech, Budapest, Hungary). To avoid specific biases due to potential differences in lesion shape, cross sections of the entire lesion were analyzed and averaged [17 (link)].
To obtain the aortas for the analysis, after fixing in PFA overnight at 4 °C, the aortas were whole-mount stained with 0.2% ORO in methanol, opened longitudinally and pinned to black wax to expose the entire luminal surface. Images were acquired using a Leica MZ6 SZX10 stereomicroscope (Leica Microsystems, Wetzlar, Germany) coupled to a Leica DFC300 digital color camera (Leica Microsystems). The planimetric area of atherosclerotic plaques was measured in pixels using ImageJ.
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3

Mapping Brain Black Carbon Particles

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Black carbon particles in the different brain regions were detected via a specific and label-free technique based on the nonincandescence-related white light generation of the particles under femtosecond-pulsed illumination, as previously described by our research group.10 (link),12 (link),13 (link) Images were taken with a confocal microscope (Carl Zeiss) equipped with a 2-photon femtosecond-pulsed laser (810 nm, 150 fs, 80 MHz) (Spectra-Physics) using a Plan-Neofluar 10x/0.3 objective (Carl Zeiss). Two-photon–induced white light emission of carbon particles was acquired in the nondescanned mode after spectral separation and emission filtering using 400-410 nm and 450-650 nm band-pass filters. The resulting tile scans of 13.35 μm × 13.35 μm were recorded with a 1.66 μm pixel size and 4.10 μs pixel dwell time.
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4

Whole-Mount X-Gal Staining and Histological Analysis

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Fgf20β-Gal/+ embryos were pre-fixed for 2 hr in 2% PFA, 0.2% glutaraldehyde (Sigma-Aldrich, St. Louis, MO) in PBS, 4°C and then rinsed with PBS and washed 3 × 15 min with PBS, 2 mM MgCl2 (Merck, Darmstadt, Germany), 0.02% NP-40 (Sigma-Aldrich), 4°C. Subsequently, the samples were stained for 10 hr at RT, in dark with 1 mg/ml X-Gal (Thermo Fischer Scientific, Vilnius, Lithuania), 5 mM K3Fe(CN)6 (Merck, Darmstadt, Germany), 5 mM K4Fe(CN)6 (Merck, Darmstadt, Germany), 2 mM MgCl2, 0.1 % NP-40 (Calbiochem, San Diego, CA), 0.2% Na-deoxycholate (Sigma-Aldrich, St. Louis, MO) in PBS. The embryos were washed 3 × 10 min with PBS and fixed with 4% PFA in PBS at RT. After imaging, the samples were processed for paraffin blocks using standard protocols and sectioned into 5 µm sagittal sections. The sections were deparaffinized and counter stained with Nuclear Fast Red (Sigma-Aldrich, Steinheim, Germany) for 5 min, dehydrated and mounted. The sections were imaged using Axio Imager M.2 wide field microscope equipped with Plan-Neofluar 10X/0.3 objective and AxioCam HRc camera (Zeiss).
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5

Quantifying Sporozoite Gliding Motility

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To assess gliding motility, 5,000 sporozoites were resuspended in 1x PBS containing 5% FCS and 10 μg/mL of hmAb in a final volume of 20 μL. The resulting suspension was transferred to an 18-well slide (iBidi) and centrifuged at 400 g for 3 min at 4°C. The slide was then allowed to equilibrate at 37°C, 5% CO2 for 3 min in the incubation chamber (Incubation System S, Zeiss) of an inverted epifluorescence wide-field microscope (AxioObserver Z.1, Zeiss) equipped with a LED illumination system (Colibri2, Zeiss), a CCD camera (AxioCam MR, Zeiss) and controlled by the AxioVision software (version 4.8.2.0, Zeiss). Time-lapse movies were then recorded for 2–4 min at a rate of one image per second with an EC “Plan-Neofluar” 10x/0.3 objective (Zeiss) using a 470 nm LED and a matching filter cube (43HE, Zeiss) to excite and detect GFP and thus visualize sporozoites. Average sporozoite velocity over the first 2 min of the acquisition was determined using the MTrack2 plug-in from Fiji.38 (link)
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6

Staining of Peripheral Anatomy in Drosophila

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For the staining of peripheral anatomy (Fig 1) a line with the genotype OK371-Gal4;UAS-mCD8::mRFP was used and crossed into MHC-tauGFP line. Dissection protocol for extracellular recordings was used, leaving all three pharyngeal nerves and projections intact. Remaining cuticle surrounding the CPS was removed. The sample of remaining CNS, CPS and nerves of interest was stained using anti-chicken-GFP (1:500, Abcam plc) and anti-mouse-mRFP (1:500) as primary antibodies. In brief, samples were fixed for 60min in 4% PFA and the washed with 0.5 PBT (2x10min, 2x15min, 2x30min), then tissue was blocked using 0.5 PBT containing 5% goat-serum for 60min. Primary antibody was added and incubated overnight at 4°C. Samples were washed the next day with 0.1 PBT (2x10min, 2x15min, 2x30min) and 60min blocked with 0.1 PBT containing 5% goat serum. Secondary antibodies (anti-mouse-Cy3, 1:250 Jackson ImmunoResearch and anti-chicken-Alexa488, 1:250 Invitrogen) were added and the samples were incubated at 4°C overnight. After washing the samples the next day, they were immediately scanned using a Laser scanning microscope (Zeiss LSM 780) equipped with a Zeiss LCI “Plan-Neofluar” 25x/0.8 Imm Korr DIC M27 objective and a Zeiss “PlanNeofluar” 10x/0.3 objective.
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