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7 protocols using anti v5 fitc antibody

1

Recombinant Protein Expression and Purification

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Recombinant proteins were expressed in SHuffle T7 Express Competent E. coli (NEB) and purified using HisTrap columns from GE Healthcare followed by size exclusion chromatography, as previosly described (10 (link)). Purified monomeric proteins were validated by SDS-PAGE. Purified chondroitin sulfate A (CSA) was obtained from Sigma. Anti-V5-FITC antibodies were obtained from Invitrogen. Most cell lines were obtained from ATCC and grown in their suggested growth media with 1x penicillin and streptomycin cocktail. The Myla2059 Lymphoma cell lines were donated by Niels Ødum at the University of Copenhagen. Mice for animal studies were acquired from Taconic Biosciences.
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2

Recombinant Protein Expression and Glycosylation Modulation

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The recombinant proteins were expressed in SHuffle T7 Express Competent E. coli (NEB) and purified using HisTrap from GE Healthcare, followed by size exclusion chromatography. Purified CSA, HS, and chondroitinase ABC were obtained from Sigma. CSC was obtained from Seikagaku, and Monoclonal anti-V5 and anti-V5-FITC antibodies were obtained from Invitrogen. Cells were transfected with siRNAs (QIAGEN) (10 nM final) against B3GAT1, CSGALNACT1, CHST11, CHST3, or ARSN using RNAiMAX (Invitrogen) and analyzed for rVAR2 binding by flow cytometry and for mRNA expression by RT-PCR.
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3

Immunofluorescence Staining of BL Tissues

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For immunofluorescence staining, confirmed BL tissues from the SEER Residual Tissue Repository from the United States was used. FFPE tissue was deparafinized and re-hydrated with a series of xylene and ethanol solutions. After blocking, the tissue was incubated with 50 nM rVAR2, followed by incubation with anti-V5-FITC antibody (Invitrogen). The specificity of rVAR2 binding was tested by outcompeting protein binding with 400 μg/ml CSA (Sigma). An additional specificity control was performed by treating the tissue with 0.5 U/ml Chondroitinase ABC (ChABC, Sigma) for 1 hour at 37 °C, before blocking. Samples were counterstained with DAPI.
Imaging was performed on a Nikon C1 confocal microscope with a 60× oil objective. Each image is a composite of the following channels: blue (nuclei), green (ofCS), red (auto-fluorescence of the tissue).
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4

Lentiviral Transduction of LGR5 Isoforms

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Transduction of LGR5 isoforms in HEK293 cells was performed using the pLenti6/V5 Directional TOPO Cloning Kit (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. Briefly, the PCR-amplified coding sequences of LGR5FL and the LGR5 splice variants were cloned into pLenti6/V5-D-TOPO. This vector was co-transfected into 293FT cells with ViraPower packaging mix to generate the lentivirus. HEK293 cells were transduced with the lentivirus and stable cell lines generated by selecting with blasticidin. To verify that the target gene was transduced, immunofluorescence was performed using anti-V5-FITC antibody (Invitrogen, Carlsbad, CA, USA).
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5

Yeast Cellulase Enzyme Localization

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Saccharomyces cerevisiae CEN.PK 102-5B with different phenotypes (Additional file 7: Table S3) were cultured for 24 h for analysis. To detect the assembly efficiency of traditional dockerin and cohesin, secreted cellulases with dockerin in the supernatant were concentrated about tenfold and incubated with strains expressing scaffoldin ScafCipA3 at an OD600 of 2, 5 and 15. The secreted cellulases incubated with ScafCipA3 expressing strains without concentration were used as controls. Cells were harvested and washed twice with phosphate-buffered saline solution (PBS, pH 7.0). The cells were then suspended in PBS containing 1 mg/mL bovine serum albumin to an OD600 of 1.0. Monoclonal mouse antibodies including anti-V5-FITC antibody (Invitrogen) for scaffoldin, anti-DDDDK tag antibody (DyLight 488; Abcam, UK) for BGL1 and CBHI, and anti-Myc tag antibody (fluorescein isothiocyanate conjugated [FITC]; Abcam, UK) for CelA were used for immunofluorescence microscopy and FACS analyses. The antibodies were mixed with the cell suspension at 25 °C for 1 h with 1:500 dilution. Cells were harvested and washed twice with PBS after staining. Images were taken using immunofluorescence microscopy (Olympus, Japan) and flow cytometry analysis (FACS) was performed using a FACSCanto II system (BD FACSCanto II, USA).
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6

Visualizing IFITM3 and Mycobacterium Trafficking

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A549 cells stably transduced with the IFITM3-V5 tag construct or the empty vector were seeded on a small coverslip in 12-well plates in fresh media and were infected with MTb-mCherry for 3 hr, after which the cultures were washed and fresh media were added. Cells were further incubated at 37°C for 20 hr. MTb-infected cells were fixed with 4% paraformaldehyde before they were blocked and permeabilized with buffer containing 5% normal donkey serum and 0.3% Triton X-100 in PBS for 2 hr. Cells were labeled with 1:150 rabbit anti-Rab5 or 1:100 rabbit anti-Rab7 antibody (Cell Signaling Technology) overnight in antibody dilution buffer containing 1% BSA followed by 1:500 secondary donkey anti-rabbit DyLight 649 antibody (BioLegend) for 2 hr. Cells were further labeled with mouse fluorescein isothiocyanate (FITC) anti-V5 antibody (Invitrogen) overnight, after which slides were mounted in mounting media containing DAPI. Images were captured with an Olympus (FV1000) confocal microscope and Fluoview Software 2. Analysis was performed using ImageJ software.
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7

Visualizing IFITM3 and Mycobacterium Trafficking

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A549 cells stably transduced with the IFITM3-V5 tag construct or the empty vector were seeded on a small coverslip in 12-well plates in fresh media and were infected with MTb-mCherry for 3 hr, after which the cultures were washed and fresh media were added. Cells were further incubated at 37°C for 20 hr. MTb-infected cells were fixed with 4% paraformaldehyde before they were blocked and permeabilized with buffer containing 5% normal donkey serum and 0.3% Triton X-100 in PBS for 2 hr. Cells were labeled with 1:150 rabbit anti-Rab5 or 1:100 rabbit anti-Rab7 antibody (Cell Signaling Technology) overnight in antibody dilution buffer containing 1% BSA followed by 1:500 secondary donkey anti-rabbit DyLight 649 antibody (BioLegend) for 2 hr. Cells were further labeled with mouse fluorescein isothiocyanate (FITC) anti-V5 antibody (Invitrogen) overnight, after which slides were mounted in mounting media containing DAPI. Images were captured with an Olympus (FV1000) confocal microscope and Fluoview Software 2. Analysis was performed using ImageJ software.
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