The largest database of trusted experimental protocols

6 protocols using immobilon fl polyvinylidene fluoride pvdf membranes

1

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole cell extracts for Western blotting were prepared as described previously (16 (link)). Proteins were separated by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto Immobilon-FL Polyvinylidene fluoride (PVDF) membranes (Millipore) according to standard procedures (Novex). Blots were probed with following antibodies: XRCC1 (Neomarkers, MS-1393-P0), DNA polymerase β (raised in-house and affinity-purified), α-tubulin (Sigma, T6199), MCM4 (abcam, ab4459-50), RP-A p32 (Bethyl, A300-244A), PCNA (Santa Cruz, sc-56), α-actin (Abcam, ab6276), PARP-1 (raised in-house and affinity-purified), p21 (Cell signaling, 12D1), PSAT1 (Novusbio, 21020002), PHGDH (Sigma, HPA021241), p53 (Santa Cruz, sc-126), PNKP (Abnova, H00011284-B01). Secondary antibodies conjugated with Alexa Fluor 680 (Molecular Probes) and IRDye® 800 (Rockland) fluorescent dyes were used. Detection and quantification was carried out using an Odyssey image analysis system (Li-Cor Biosciences).
+ Open protocol
+ Expand
2

Western Blotting of Cell Cycle Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole cell extracts for Western blotting were prepared as described previously [57] (link). Proteins were separated on 4% to 20% Tris-Glycine gels (Novex) and transferred onto Immobilon-FL Polyvinylidene fluoride (PVDF) membranes (Millipore) according to standard procedures (Novex). Blots were probed with following antibodies: CDK6 (Novusbio, NBP1–87,262), CDK4 (Santa Cruz, sc23896), Cyclin D1 (Santa Cruz, sc8396), and α-Tubulin (Sigma, T5168). Secondary antibodies conjugated with Alexa Fluor 680 (Thermo Scientific) and IRDye 800CW (Li-cor Biosciences) fluorescent dyes were used. Detection and quantification were carried out using an Odyssey image analysis system (Li-cor Biosciences).
+ Open protocol
+ Expand
3

Western Blotting Protocol for Protein Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
For Western blotting, unless otherwise stated, whole cell extracts that were prepared from cells grown in 15% FCS were used according to a procedure described previously [28 (link)]. 20 to 40 μg of total protein extract was separated on 4–20% Tris–Glycine gels (Novex) and transferred onto Immobilon-FL polyvinylidene fluoride (PVDF) membranes (Millipore) according to standard procedures (Novex). Blots were probed with primary antibodies detailed in Additional file 11 Table S3, and secondary antibodies conjugated with Alexa Fluor 680 and IRDye 800CW (both Li-cor Biosciences). Detection and quantification was performed using the Odyssey CLX image analysis system (Li-cor Biosciences). Tubulin or Histone H3 serves as the loading control. Each experiment was independently repeated three to five times. For quantification, protein levels were first normalised to the loading control and then to the respective control lane. Relative protein levels are indicated below the lanes and refer to the blot that is pictured.
+ Open protocol
+ Expand
4

Cardiac Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cardiac tissue protein was extracted, and the protein concentration was assessed, as previously described (Ye et al., 2018 (link)). Protein was separated by electrophoresis using Laemmli sodium dodecyl sulfate (SDS)-polyacrylamide gels and then transferred to Immobilon-FL polyvinylidene fluoride (PVDF) membranes (Millipore, United States). Subsequently, after being blocked with 5% non-fat milk for 1 h, the membranes were incubated at 4°C overnight with the following primary antibodies: ChemR23 (Santa Cruz Biotechnology, United States), Bax [Cell Signaling Technology (CST), United States], Bcl-2 (Abcam, United States), c-caspase 3 (CST, United States), phosphorylated/total-p65 (p/T-P65; CST, United States), phosphorylated/total-extracellular signal-regulated kinase (p/T-ERK; CST, United States), phosphorylated/total-c-Jun N-terminal kinase (p/T-JNK; CST, United States), phosphorylated/total-p38 mitogen-activated protein kinase (p/T-P38 MAPK; CST, United States), and GAPDH (CST, United States). Then, the membranes were treated with a second antibody at room temperature for 1 h. Finally, antibody binding was detected with a two-color infrared imaging system (Odyssey, LI-COR Biosciences, Lincoln, United Kingdom). The protein expression intensity was normalized to that of GAPDH.
+ Open protocol
+ Expand
5

Detecting Membrane-Bound Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immobilon-FL polyvinylidene fluoride (PVDF) membranes (Millipore) were pre-activated by immersing in 100% methanol for 30 sec and then washing in dH2O for 2 min. The membrane, along with two 0.5 mm filter pads, was soaked in PBS for 10 min in order to equilibrate in the buffer. A dry filter pad was placed on top of a bench, followed by the soaked filter pad and finally the PVDF membrane. Various amounts (1 µg, 0.5 µg, 0.25 µg, 0.125 µg, 0.0625 µg, 0.03 µg, 0.015 µg, 0.0075 µg) of MBP-fusion proteins were then adsorbed onto their respective grids in the membrane and left to dry on the bench, at RT, for 2 h. The blot was then blocked in 15 mL of 5% non-fat dry milk in PBS for 1 h in RT, followed by three washes in PBS for 5 min. Approximately 10 nM each of A10 scFv, A10 scFv-Fc and anti-α1 antibody (Abcam) was added to the appropriate strips and incubated overnight at 4°C with shaking. The binding of scFv and scFv-Fc versions of A10 was detected with α-Flag-800CW (1∶15,000; Rockland Immunochemicals, Gilbertsville, PA) and anti-α1 with goat, anti-rabbit HRP (1∶5,000; Pierce) for 45 min at RT. The membrane was washed three times and imaged with the Li-COR imager dual channel (800 nm and chemiluminescent) device (Odyssey Li-COR Biosciences; Lincoln, NE).
+ Open protocol
+ Expand
6

Western Blot Analysis of CFTR Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in NP-40 lysis buffer (Table S5), incubated on ice for 20 min, and then centrifuged at 15,000 × g for 20 min. Protein concentration was determined by Pierce BCA Protein Assay Kit, and 20 μg protein was denatured with 2.5 μL LDS sample buffer and 1 μL reducing agent (NuPAGE) at 37°C for 30 min. Samples were resolved on NuPAGE 4%–12% BisTris protein gels with mass standards of 10–250 kDa (LI-COR). Proteins were transferred to Immobilon-FL polyvinylidene fluoride (PVDF) membranes (Millipore). Membranes were blocked in Odyssey Blocking Buffer (LI-COR Biosciences), immunostained with anti-CFTR or anti-α-tubulin followed by IRDye 800CW goat anti-mouse immunoglobulin G (IgG; LI-COR Biosciences), visualized, and quantified on an Odyssey IR Imager (LI-COR Biosciences) (Tables S3 and S4).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!