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53 protocols using tcs sl

1

Immunohistochemical and Immunocytochemical Analysis of Liver Tumor Samples

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In the IHC experiments, samples of liver tumors (T) were fixed in 4% paraformaldehyde and embedded in paraffin. The sections of 3 µm were incubated with rabbit polyclonal anti-IRS-4 (Upstate Biotechnology, Lake Placid, NY, USA), as described previously [2 (link)]. Immunostaining of the PCNA, Ki-67, and pH3 antigens in the histological sections was performed using routine techniques performed in the Pathology Department of the Hospital Central de la Defensa Gómez Ulla using the following antibodies PC10, SP6, and PHH3, respectively.
In the ICC experiments, HepG2 cells were cultured on glass coverslips and for some experiments were transfected as described above. Cells were fixed with 4% paraformaldehyde and permeabilized with 0.1% Triton X-100. Then, HepG2 cells were incubated with anti-IRS-4 (1/100), pERK1/2, and anti-integrin α2 (1/100) rabbit polyclonal antibodies, or antibody-free PBS as a nonspecific control. After incubation, cells were labeled using FITC-conjugated anti-rabbit Ig antibodies (1/1000 dilution) (Molecular Probes, Eugene, OR). Nuclei were stained by incubation with propidium iodide (Molecular Probes, Eugene, OR) and the HepG2 cells examined under a laser scanning confocal microscope (Leica TCS-SL). In another set of experiments, F-actin was labeled using Phalloidin-FITC.
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2

Immunofluorescence Staining of Mouse Organ Tissues

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Preparations of brain, lung, heart, liver, kidney and gut from 8–12 weeks old C57BL/6J mice were frozen in −50°C 2-methylbutane, cut on a cryostat in 20 μm sections and mounted on glass slides. For tissue reactivity screening according to established protocols (Kreye 2016 (link) Brain), thawed unfixed tissue slices were rinsed with PBS then blocked with blocking solution (PBS supplemented with 2% Bovine Serum Albumin (Roth) and 5% Normal Goat Serum (Abcam)) for 1 hour at room temperature before incubation of mAbs at 5 μg/ml overnight at 4°C. After three PBS washing steps, goat anti-human IgG-Alexa Fluor 488 (Dianova, 109–545-003) diluted in blocking solution was applied for 2 hours at room temperature before additional three washes and mounting using DAPI-containing Fluoroshield. Staining was examined under an inverted fluorescence microscope (Olympus CKX41, Leica DMI6000) or confocal device (Leica TCS SL). For co-staining, tissue was processed as above, but sections were fixed with 4% PFA in PBS for 10 minutes at room temperature before blocking. For co-staining, the following antibodies were used: mouse Smooth Muscle Actin (clone 1A4, Agilent, 172 003), goat anti-mouse IgG-Alexa Fluor 594 (Dianova, 115–585-003). For nuclei staining DRAQ5™ (abcam, ab108410) was used.
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3

Immunofluorescence Analysis of Retinal Sections

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To obtain retinal sections for immunofluorescence analysis mouse eyecups were fixed, infiltrated in sucrose or acrylamide, embedded in OCT and cryosectioned as described [34] (link). Sections were incubated with blocking solution (3% normal goat serum, 1% BSA, 0.3% Triton X100 in PBS pH 7.4, 1 h at room temperature); primary antibody (14 h at 4°C), secondary antibody (1 h at room temperature), and fixed for 15 min in 4% paraformaldehyde prior to being mounted with Mowiol [Calbiochem, Billerica, MA]. An antigen retrieval treatment of retinal sections [incubation in 0.05 mg/ml proteinase K in PBS pH 7.4 for 2 min at room temperature followed by a heat shock at 70°C for 10 sec] was needed for GCAP2 immunostaining. Antibodies used were: a polyclonal anti-GCAP2 (35), monoclonal anti-GCAP2 [mAb2235, Millipore, Billerica, MA], rabbit monoclonal anti-14-3-3ε [EPR3918, abcam, Cambridge, UK]. Secondary antibodies for immunofluorescence were Alexa 488 goat anti-rabbit IgG and Alexa 555 goat anti-mouse IgG [Molecular Probes, Eugene, Oregon]. Images were acquired at a laser scanning confocal microscope (Leica TCS-SL and TCS-SP2).
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4

Actin Staining of Cultured Cells

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For actin staining 10,000 cells were grown in culture medium on non-treated cover slips at 37 °C, 5% CO2 overnight, fixed in 4% paraformaldehyde (PFA)/PBS for 10 min, permeabilized with 1% Triton X-100/PBS for 3–5 min and blocked with 1% BSA for 30 min. Actin was stained with Phalloidin Alexa Fluor 546 (Invitrogen, USA)/ 40x in PBS for 30 min. Cover slips were mounted on slides and imaged under a confocal microscope TCSSL (Leica, Germany).
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5

Arabidopsis Mesophyll Protoplast Transfection

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Arabidopsis mesophyll protoplasts were prepared from 4-week-old rosette leaves by soaking leaf slices with an enzymatic mixture containing 1% (w/v) cellulase R10 and 0.4% (w/v) macerozyme R10 (Yakult Pharmaceutical) for 2–3 h. The digested protoplasts were resuspended in the W5 solution (154 mM NaCl, 125 mM CaCl2, 5 mM KCl, and 2 mM MES [pH 5.8]), and transfected in combination with 20 μg recombinant plasmids (CBD1-PEZSNL, PAA2-PEZSNL, PIC1-PEZSNL, OEP7-PEZSNL, and RBCS1-PEZSNL) using a PEG-mediated transformation protocol. The transformed protoplasts were incubated in the dark at 22°C overnight before imaging using a laser scanning confocal microscope (Lei TCS SP8-MaiTai MP and Leica TCS-SL).
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6

Detailed Morphological Analysis of CA1 Pyramidal Neurons

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Throughout the whole-cell recordings, except those for Ca2+ imaging, biocytin was injected into CA1 neurons by patch pipette. Following slice fixation with paraformaldehyde (4% PFA in phosphate buffer saline (PBS); Sigma-Aldrich, Italy), biocytin was detected as previously described [84 (link),91 (link)]. A confocal microscope (Leica TCS-SL), equipped with Argon and He/Ne laser sources, was used to perform morphological reconstruction of each labelled pyramidal cell. Reconstructed neurons without clear dendritic cutting at the slice surface were considered for morphological analysis. The total length of pyramidal cell dendrites was measured using the NeuronJ software [96 ], whereas a Sholl concentric ring analysis was applied to assess the dendrite tree complexity, as previously described [84 (link)].
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7

Rhodamine B-Enhanced Dentin Bonding Analysis

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Rhodamine B fluorescent dye (Merck, Darmstadt, Germany) at a concentration of 0.01 wt % was added to the bonding agent prior to application to the dentin surfaces. Using the same adhesive protocols described above, one specimen per group was prepared for observation under confocal laser scanning microscopy (CLSM; TCS SL, Leica, Wetzlar, Germany). Only one composite increment was placed on the adhesive resin. The teeth were then cut longitudinally into two halves and both surfaces were wet-polished for one minute with SiC paper in sequence (Grit 800/1200/2000/4000). The samples were washed thoroughly with water and kept moist prior to the CLSM examination. A CLS microscope was used to obtain images of the bonded interfaces, focusing on the thickness of the bonding agent, formation of a hybrid layer, and penetration of the bonding solution into the dentinal tubules. The fluorescent images were obtained with LSM-700 (Carl Zeiss, Oberkochen, Germany) in a 200-fold magnification and processed with Image J (NIH, Bethesda, MD, USA).
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8

Fluo-3/AM Intracellular Ca2+ Measurement

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Fluo-3/AM (Beyotime, Shanghai, China) was used to detect intracellular Ca2+ concentration ([Ca2+]i). After washing with PBS, the cells were incubated with Fluo-3/AM solution for 45 min at 37°C. The fluorescence intensity of Fluo-3/AM-loaded cells were detected by confocal microscopy (Leica TCS SL, Heidelberg, Germany) at 488 nm excitation and 525 nm emission wavelengths.
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9

Protoplast Transfection in Arabidopsis and Nicotiana

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Two Arabidopsis mesophyll protoplasts were prepared from four-week-old rosette leaves by soaking leaf slices with an enzymatic mixture containing 1% Cellulase R10 and 0.4% Macerozyme R10 (Yakult Pharmaceutical, Tokyo, Japan) for 2–3 h. The digested protoplasts were re-suspended in the W5 medium (154 mM NaCl, 125 mM CaCl2, 5 mM KCl and 2 mM MES, pH 5.8) and transfected in combination with 20 μg recombinant plasmids (CBL4-GFP and CBL10-GFP) by the PEG-mediated transformation protocol [41 (link)]. The transformed protoplasts were incubated in dark at 22 °C overnight before imaging using laser scanning confocal microscope (Leica TCS-SL, Buffalo Grove, IL, USA). Infiltration of Nicotiana benthamiana leaves was performed as previously described by Walter et al. (2004) [41 (link)]. Protoplasts were prepared three days after infiltration by cutting leaf discs into small pieces and incubating for 3 h in the enzyme solution (0.4 M mannitol, 1% cellulase R10, 0.3% macerozyme R10, pH 5.7). The filter settings are Ex 488 nm/Em 475–560 nm for GFP, Ex 514 nm/Em 490–560 nm for Venus, Ex 561 nm/Em 540–640 nm for mcherry, and Ex 488 nm/Em 650–720 nm for chlorophyll.
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10

Immunofluorescent Staining of Podocin

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Cryostat sections (thickness, 4 mm) fixed in cold acetone were incubated with FITC-vWF (Abcam) antibody and rabbit anti-podocin overnight, and then the next day with FITC-labeled anti-rabbit IgG (Biosource, Camarillo, CA, USA) for 1 h at 37 °C in the dark. After washing thrice with PBS for 3 min, sections were counterstained with 1 mg/mL 40′,6-diamidino-2-phenylindole for 1 min and mounted in anti-fade medium. Slides were viewed under a confocal microscope (TCS-SL; Leica, Bannockburn, IL, USA). Staining intensity was analyzed using image-analysis software (GraphPad, San Diego, CA, USA).
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