The largest database of trusted experimental protocols

17 protocols using cenp a

1

Immunofluorescence Labeling of Chromosomes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow-sorted chromosomes (105) were cytospun (Cytospin3, Shandon) on to poly(l-lysine) slides at 1,200 r.p.m. for 10 min, as previously described36 (link). Samples were incubated with blocking buffer (5% normal goat serum in 10 mM Hepes, 2 mM MgCl2, 100 mM KCl and 5 mM EGTA) for 30 min at RT, and incubated overnight at 4 °C with primary antibodies to Cenpa (catalog no. 2048S, Cell Signaling), H3K9me3 (catalog no. 07-523 or 07-442, Millipore), H3K27me3 (catalog no. ab6002, Abcam or catalog no. 07-449, Millipore), Esrrb (catalog no. PP-H6705-00, Perseus Proteomics) and Sox2 (catalog no. ab97959, Abcam). All antibodies were diluted 1:200 in blocking buffer. Chromosomes were incubated with appropriate secondary antibodies (anti-mouse Alexa 488 (catalog no. A11001, Invitrogen), anti-rabbit Alexa 488 (catalog no. A11008, Invitrogen) or anti-mouse Alexa 568 (catalog no. A11031, Invitrogen)) for 1 h at RT. All secondary antibodies were diluted 1:400 in blocking buffer. Stained chromosomes were mounted in DAPI-containing Vectashield (Vector Laboratories). Wide-field epifluorescence microscopy was performed on an Olympus IX70 inverted microscope using a UPlanApo ×100/1.35 oil objective lens and Micro-Manager software.
+ Open protocol
+ Expand
2

Immunoblot Analysis of Cardiac Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblot analysis was performed from isolated cardiac myocytes or mouse hearts using anti‐GATA4 (Santa Cruz, sc‐1237, diluted 1:500), STAT6 (Abcam, ab44718, diluted 1:500), cyclin A2 (Abcam ab38, diluted 1:400), cenpa (Cell Signaling C51A7, diluted 1:1,000), and anti‐GAPDH (Fitzgerald, 10R‐G109a, diluted 1:6,000) or anti‐actin (Sigma, A2066, diluted 1:10,000) antibodies following standard procedures. Densitometry analysis was conducted with Quantity One software (Bio‐Rad).
+ Open protocol
+ Expand
3

Immunoblot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunoblot analysis, whole-cell lysates were separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis, transferred onto nitrocellulose membranes (Bio-Rad), and then probed with the following antibodies: DM1A (α-tubulin, 1:5000, BD), CENP-A (1:1000, Cell Signalling #2186S or Abcam #ab13939), ACA (2 μg ml−1, Antibodies-Online GmbH, 15-235-0001), GAPDH (1:2000, Cell Signalling, 14C10). Not cropped immunoblots are shown in Source Data file. The experiment was repeated twice for each cell line.
+ Open protocol
+ Expand
4

Immunoblot analysis of cellular proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunoblot analysis protein samples were separated by SDS-PAGE, transferred onto nitrocellulose membranes (BioRad) and then probed with the following antibodies: DM1A (α-tubulin, 1:5000), CENP-A (Cell Signaling, 1:1000), GFP (cell signaling, 1:1000), HJURP [Covance, 1:1000(Foltz et al. 2009 (link))], CENP-B (Abcam and Upstate, 1:1000), GAPDH (Abcam, 1:10000), CENP-C (a gift from Iain Cheeseman, MIT, Boston and Ben Black, UPENN, Philadelphia), c-Myc (SIGMA, 1:1000) and H4 (Abcam, 1:250).
+ Open protocol
+ Expand
5

Immunofluorescence Imaging of KLLN Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunofluorescence, cells were transfected with KLLN plasmid and grown on cover slips in a 12-well plate. Forty-eight hours after transfection, cells were fixed for 15 min with 3.7% formaldehyde. After washing with PBS (Phosphate buffered saline), cover slips were permeabilized in 0.3% triton PBS for 5 min and blocked in normal goat serum for 1 h at room-temperature before being incubated overnight at 4°C with primary antibodies diluted in blocking solution: CENP-A at 1:400 (Cell Signaling, cat# 2186) and FLAG M2 at 1:100 (Sigma-Aldrich, cat# F-1804). Coverslips were again washed with PBS and incubated for 1 h with secondary antibodies in 0.3% triton PBS: Alexa Fluor 488 goat anti-rabbit IgG (cat# A11008) at 1:1000 and Alexa Fluor 568 goat anti-mouse IgG (cat# A11031) at 1:1000 (Life Technologies). After washing, coverslips were mounted onto slides with DAPI-containing mounting media (Vector Laboratories, Burlingame, CA, USA). Images were analyzed using upright confocal microscopy (Leica Microsystems, Buffalo Grove, IL, USA) and Leica Confocal Software for image analysis.
+ Open protocol
+ Expand
6

Whole-Cell Protein Extraction and Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-cell protein extracts were prepared by lysing cells in 2X NETN buffer (200 mM NaCl, 40 mM Tris-Cl (pH 8.0), 1 mM EDTA, and 1% NP-40) supplemented with a freshly prepared protease inhibitor cocktail (Sigma) and boiled for 10 min. Equal amounts of protein extracts were resolved by SDS-PAGE and transferred to either PVDF or nitrocellulose membrane. Immunoblotting was performed with the following antibodies: MLL (A300-374A, Bethyl Labs); SETD1A (A300-288A, Bethyl Labs); CENP-A (2186S, Cell Signaling Technology); CENP-B (ab25734, Abcam), CENP-C (ab50974, Abcam), HJURP (80508S, Cell Signaling Technology), HA (H6908, Sigma), and α-tubulin (T5168, Sigma). After probing with relevant secondary antibodies, blots were developed using Amersham ECL substrate or digital imaging using LI-COR Biosciences as described [102 (link)].
+ Open protocol
+ Expand
7

Chromatin Dynamics and Transcriptional Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
CENPA (Cell Signalling Technology 2048S), H3K27me3 (EMD Millipore 07-449), H3K9me3 (Abcam ab8898), H3K9ac (Abcam ab4441), HP1α (Abcam ab109028), HDAC3 (Cell Signalling Technology 3949S), pMLC-2 (Ser 19), pPol2 (Abcam ab5131), MRTF-A (Santa Cruz Biotechnology sc-21558), and Lamin B1 (Abcam ab16048).
+ Open protocol
+ Expand
8

Western Blot Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were prepared in RIPA lysis buffer (Santa Cruz Biotech, Santa Cruz, CA), separated by NuPage gel (Invitrogen) and blotted onto polyvinylidenedifluoride membranes. Membranes were blocked with 5% BSA in TBS-T and incubated with primary (1:1,000) and secondary (1:5,000) antibodies. Primary antibodies used were antibodies against β-actin, Cyclin D1 (DCS6), phospho-Cdc2 (Tyr15), Cenp-a (Cell Signaling Technologies, Beverly, MA) and Aurora-B kinase (Abcam, Cambridge, UK). Secondary antibodies used were alkaline phosphatase-conjugated mouse or rabbit anti-IgG (Promega, Madison, WI). Membranes were developed using colorimetric NBT-BCIP substrate (Promega), as described87 (link).
+ Open protocol
+ Expand
9

Immunoblot Analysis of Centromeric Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell pellets were suspended in protein sample buffer, and samples were separated by SDS–PAGE, transferred onto nitrocellulose membranes (Bio‐Rad), and revealed with the following antibodies: DM1A (α‐tubulin, 1:5,000), CENP‐A (1:1,000; Cell Signaling), GFP (1:1,000; Chromotek), HJURP (1:1,000; a kindly gift from D. Foltz), DAXX (a kindly gift from G. Almouzni), CENP‐B (1:1,000; Abcam), GAPDH (1:10,000; Abcam), CENP‐C (a kindly gift from I. Cheeseman and B. Black), and Vinculin (1:2,000, Sigma).
+ Open protocol
+ Expand
10

Immunoblotting of DNA Damage Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary antibodies used were HORMAD1 (HPA037850, Sigma Aldrich), ß-Actin (A5316, Sigma Aldrich), Histone-H3 (9715, Cell signalling technology) CENP-A (2186, Cell signalling technology), γ-H2AX (Ab22551, Abcam), RAD51 (sc-8349, Santa Cruz Biotechnology), GAPDH (D16H11, Cell signalling technology), 53BP1 (Clone BP13, Millipore). Secondary antibodies used were Alexa Fluor 488 Goat Anti-Mouse IgG, Alexa Fluor 555 Donkey Anti-Rabbit IgG (Life Technologies) or Anti-mouse/rabbit HRP conjugate (GE).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!