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Dimethyl sulfoxide (dmso)

Manufactured by Corning
Sourced in United States, United Kingdom

DMSO is a versatile polar aprotic solvent that is widely used in various laboratory applications. It is a colorless, odorless, and hygroscopic liquid with a high boiling point and low toxicity. DMSO is known for its excellent solvating properties, making it a valuable tool for dissolving and dispersing a wide range of organic and inorganic compounds.

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83 protocols using dimethyl sulfoxide (dmso)

1

Isolating PBMCs from Whole Blood

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Whole blood (~350 mL) was collected from both male and female healthy adult donors via antecubital venipuncture into BD vacutainer, and Sodium Heparin blood collection tubes (BD, Franklin Lakes, NJ). Blood was diluted 2-fold in calcium- and magnesium-free phosphate-buffered saline (PBS pH: 7.2; Fisher Scientific, ​​Waltham, MA) within 30 min of collection. A single-step density gradient centrifugation was performed to isolate peripheral blood mononuclear cells (PBMCs) by slowly layering diluted blood (30 mL) over 15 mL of Lymphoprep™ (STEMCELL Technologies, Vancouver, Canada) contained within either a 50 mL SepMate™ (STEMCELL Technologies) or a 50 mL conical tube. Stepwise centrifugation at 1,200 x g for 10 min at room temperature with slow deceleration was performed. The buffy coat interface containing PBMCs was collected into 50 mL conical tubes and pelleted via centrifugation (1,400 RPM for 10 min). Residual red blood cells were removed with treatment with ACK Lysing Buffer (Gibco, Waltham, MA). PBMCs were then washed twice with 1X PBS, pelleted as above, and cryopreserved at -80°C in 90% (v/v) fetal bovine serum (FBS; R&D Systems, Minneapolis, MN) and 10% (v/v) dimethyl sulfoxide (Corning, Corning, NY) in cryovials labeled with each donor’s unique sample identification number, followed by transfer to liquid nitrogen storage within 24 h.
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2

Compound Preparation and Application

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DIM (cat. # D3232, LKT Laboratories, St. Paul, MN, USA), RG-7388 (cat. # 21532, Cayman, Ann Arbor, MI, USA), and Nutlin-3a (cat. # 44151, Millipore, Billerica, MA, USA) were dissolved/diluted in dimethyl sulfoxide (DMSO, Corning, Manassas, VA, USA) and applied to the cell culture to reach the indicated concentrations.
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3

Cytotoxicity Evaluation of Plant Extracts

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Ethanol (95%) (BDH laboratory-England), Deionized water, Petroleum ether (BDH laboratory-England), Ethyl acetate (BDH laboratory-England), Rotary evaporator (Heidolph-Germany), Separating funnel. Dulbecco’s modified eagle medium (DMEM) (caisson labs, USA), fetal bovine serum (FBS) (Hyclone, South America) penicillin–streptomycin (Hyclone, US), Phosphate buffered saline (PBS) (Oxoid, England), (3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide) (MTT) (Bioworld, USA), Dimethyl sulfoxide (DMSO), syringe filters 0.2 µm, Eppendorf tubes, T-flask 25 cm2 (corning, USA), hemocytometer, 96 well plates (corning, USA), petroleum ether dilutions (100 µg/mL, 200 µg/mL and 300 µg/mL), ethyl acetate dilutions (100 µg/mL, 200 µg/mL and 300 µg/mL).
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4

Isolation and Analysis of Compounds

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We obtained dimethyl sulfoxide from Corning (Corning, NY, USA), Dulbecco phosphate-buffered saline (PBS) from Gibco (Little Rock, AR, USA), and rifampicin and isoniazid from Sigma-Aldrich (St. Louis, MO, USA). MS-related reagents included LC-MS grade acetonitrile, water, ammonium acetate, ammonium hydroxide, and formic acid from Sigma-Aldrich (St. Louis, MO, USA).
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5

LC-MS Peptide Conjugate Preparation

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The following reagents were LC-MS grade: water was purchased from Omnisolv (Billerica, MA), acetonitrile (ACN) was purchased from J. T. Baker (Center Valley, PA), and formic acid was purchased from Thermo Fisher Scientific (Rockford, IL). All other chemicals were analytical grade: dithiothreitol (DTT) was purchased from G Bioscience (St. Louis, MO), trifluoroacetic acid (TFA) was purchased from Thermo Fisher Scientific (Tempe, AZ), dimethyl sulfoxide (DMSO) was purchased from J. T. Baker, while phosphate-buffered saline (1x PBS) was purchased from Corning (Manassas, VA). Copper sulfate (4% CuSO4) solution was provided in a bicinchoninic acid assay (BCA) kit and purchased from Thermo Fisher Scientific. FP8 lyophilized powder was synthesized by Chinese Peptide Company (China), and all FP8-protein conjugates were prepared in-house.
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6

PBMC Isolation and Cryopreservation

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All plasma, CSF, and urine biospecimens utilized for these analyses were collected under fasting conditions as described previously, at baseline (Visit 1) and post-treatment (Visit 9), the morning of the second day of the final drug administration cycle8 (link). Peripheral blood mononuclear cell (PBMC) isolation was performed in BD Vacutainer CPT Mononuclear Cell Preparation (CPT) Sodium Heparin tubes (Franklin Lakes, NJ) according to the manufacturer’s protocol. The resulting PBMCs were stored in three, 1 ml aliquots containing heat inactivated fetal bovine serum (Corning, NY) with 10% dimethyl sulfoxide (Corning, NY). The PBMCs were stored overnight at −80°C in a Mr. Frosty container (Nalgene, Rochester, NY) before final storage in a liquid nitrogen freezer.
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7

MTT Assay for SKOV3 Cell Viability

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SKOV3 cells incubated with 1X PBS and various agents were plated in a 24-well plate in triplicate. Dark controls were subject to treatment with various agents, but without laser irradiation. Plated SKOV3 cells were left overnight. On the following day, SKOV3 cells were washed with 1X PBS and incubated with 250 μL RPMI 1640, supplemented with 10% FBS and 1% Penicillin/Streptomycin. In total, 250 μL of cell samples were incubated for 4 h at 37 °C, supplemented with 5% CO2, and then washed twice with 1XPBS and trypsinized. For laser irradiation experiments, cells were concentrated into 50 μL samples. After irradiation (Do = 50 or 90 J/cm2, ∆τlaser = 500 ms), cells were returned to a plate and incubated overnight at 37 °C, in the presence of 5% CO2. On the following day, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) reagent (Sigma Aldrich, St. Louis, MO, USA) was added. After 4 h of incubation at 37 °C, in the presence of 5% CO2, the solution was aspirated and formazan crystals were dissolved in 100% dimethyl sulfoxide (Corning Inc., Corning, NY, USA). Absorbance was measured at 572 nm using the SpectraMax M3 plate reader. Cell viability was then determined using a calibration curve obtained from SKOV3 cells in a 96-well plate.
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8

PBMC Proliferation Assay with PD-L1 Inhibition

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Peripheral Blood Mononuclear Cells (PBMCs) were isolated from heparin-anticoagulated whole blood using a Ficoll-Paque PLUS density gradient (GE Healthcare Biosciences, Sweden), and cryopreserved in medium containing 90% fetal calf serum (HyClone) and 10% dimethyl sulfoxide (Corning, USA). Prior to the experiment, cells were thawed and rested overnight in a 37°C CO2 incubator. For proliferation assays, Carboxyfluorescein succinimidyl ester (CFSE) (Biolegend USA) labeled PBMC were stimulated for 4 days with plate bound 1 μg/ml anti-CD3 and anti-CD28 (Biolegend, USA) antibodies and 10ug/ml of PD-L1 Ig or Control Ig protein (Biolegend, USA) with varying concentrations of Kynurenine (Tocris, USA). Four days later, cells were stained with CD3-APCCy7 antibody (Biolegend, USA) and acquired in BD FACSAria instrument. Results were analyzed in Flow Jo software. Supernatants were analyzed for IFNγ using the kit, Human IFN gamma ELISA Ready-SET-Go according to the manufacture's instruction.
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9

BMAC Cryopreservation Protocol

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Ten million nucleated cells from each BMAC sample (10À85 mL)
were directly transferred into cryogenic vials and resuspended in chilled cryopreservation medium (1 mL) consisting of 63% minimal essential medium alpha (Corning, Corning, NY, USA), 1% L-alanyl-L-glutamine (Corning), 1% penicillin-streptomycin (GE Healthcare, Chicago, IL, USA), 30% fetal bovine serum (Access Biologicals, Vista, CA, USA) and 5% dimethyl sulfoxide (Corning). The cryogenic vials were immediately added to an isopropyl alcoholÀbased controlled rate freezing container and placed in a À80°C freezer. After 24 h, the BMAC samples were removed from the controlled rate freezing container and remained at À80°C for up to 1 week before being transferred to liquid nitrogen for cryogenic storage.
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10

Transdermal Delivery of LiH and Keto

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Lidocaine hydrochloride (LiH), and ketoprofen (Keto), were purchased from Fagron Hellas (Athens, Greece). Propylene glycol (PG, !99.5%), l-menthol (Men), triethyl citrate (TEC), dimethyl sulfoxide (DMSO), thiazolyl blue tetrazolium bromide (MTT), Triton X-100, Hank's Balanced Salt Solution (HBSS), 4-(2-hydroxyethyl) piperazine-1-ethanesulfonic acid (HEPES), polyvinylidene fluoride filters (pore size, 0.45 mm), the TR146 cell line (passage 9), the 96well plates and the Transwell® plates (Corning®; wells, 12; pore size, 0.4 mm; insert diameter, 12 mm) were purchased from SigmaeAldrich (Steinheim, Germany). Ham's F12 (with L-gluta- mine) and Fetal Bovine Serum (FBS) were purchased from Lonza (Basel, Switzerland). Ethyl cellulose (EC, Ethocel™ Std 45) and hydroxypropyl methylcellulose (HPMC, Affinisol™ HPMC HME 15LV) were supplied by the Dow Chemical Company (Midland, USA). All other materials were analytical grade.
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