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Bacillus subtilis

Manufactured by Merck Group
Sourced in Germany, United States

Bacillus subtilis is a Gram-positive, spore-forming bacterium commonly used in laboratory settings. It is a rod-shaped bacterium that is able to form endospores, which are highly resistant structures that allow the bacterium to survive in harsh environmental conditions. Bacillus subtilis is widely studied and used as a model organism in microbiology due to its well-characterized genome and ease of genetic manipulation.

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9 protocols using bacillus subtilis

1

Antioxidant and Antibacterial Evaluation

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Methanol, hexane, chloroform, ethyl acetate and ethanol were purchased from Junsei Chemical Co., Ltd., Tokyo, Japan. Potassium phosphate monobasic and dibasic, xanthine, xanthine oxidase, allopurinol, and hydrochloric acid were obtained from Sigma-Aldrich Corp., St. Louis, MO, USA. Reagents including 1,1-diphenyl-2-picrylhydrazyl (DPPH), sodium acetate, acetic acid, 2,2′-azinobis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), potassium peroxodisulfate, and dibutyl hydroxytoluene (BHT) were supplied by Kanto Chemical Co. Inc., Tokyo, Japan. Four bacteria including Staphylococcus aureus, Escherichia coli, Bacillus subtilis, and Proteus mirabilis were provided by Sigma-Aldrich Corp., St. Louis, MO USA. All chemicals used were of analytical grade.
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2

Culturing Intestinal Bacterial Strains

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A lyophilized stock of the intestinal representative bacteria was obtained from the American Type Culture Collection (ATCC, Rockville, MD, USA). The commensal bacteria Escherichia coli ATCC 11775, Enterococcus faecalis ATCC 29212, and Bacillus subtilis ATCC 6633 were cultured and maintained in Luria–Bertani (LB) broth and agar (Sigma). Bifidobacterium longum ATCC 15707 was grown and maintained in Bifidus selective medium (BSM) broth and agar (Sigma). Lactobacillus brevis ATCC 14869 was cultivated on deMan, Rogosa and Sharpe (MRS) medium (Sigma). The microorganisms causing opportunistic infections Bacteroides fragilis ATCC 25285 and Bacteroides vulgatus ATCC 8482 were grown in brain heart infusion (BHI) broth (Sigma), and the number of colony-forming units (CFU) of Bacteroides was counted on Trypticase soy agar with defibrinated sheep blood (BD). All the bacteria were cultured at 37 °C. Bacteroides fragilis, B. longum, and B. vulgatus were incubated in a jar equipped with Anaerogen gas packs (Oxoid).
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3

Confirming Surfactin Presence in C9-Biosurfactant

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While previous studies indicated a lipopeptide surfactin as the main surfactant compound of C9-biosufactant, the recovered C9-biosurfactant and HPLC-grade surfactin from Bacillus subtilis (Sigma-Aldrich, St. Louis, MO, USA) were submitted to mass spectrometry analysis after dissolving each compound into methanol at the concentration of 1 mg/L34 ,35 (link). High-resolution mass spectra were collected using a Bruker micrOTOF-Q II mass spectrometer (Bruker Daltonics, Bremen, Germany) in ESI positive ion mode over the mass range of m/z 50–2000 under the following optimized settings: end plate offset, −500 V; capillary, 4800 V; nebulizer gas, 0.4 bar; dry gas, 4.0 liters/min; dry gas temperature, 180 °C. The obtained spectra of C9-biosurfactant and HPLC-grade surfactin were subsequently compared to assure the presence of surfactin in the recovered C9-biosurfactant.
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4

Enzymatic Degradation of Reeds with PBAT

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PBAT (TH801T) was purchased from Xinjiang Blue Ridge Tunhe Polyester Co., Ltd (Changji, China). It has a specific gravity of 1.21 g/cm3 and a melt mass flow rate (MFR) of 5.0 g/10 min (190 °C), with a number-average molecular weight of 6.12 × 104 g/mol. Reeds were collected from the shore of the lake (Baiyangdian, Baoding, China). For enzymatic degradation, the following enzymes and reagents were used: Proteinase K (≥30 units/mg) from Tritirachium album (Blirt, Gdansk, Poland), esterase (≥10 units/mg) from Bacillus subtilis (Sigma-Aldrich, Bavaria, Germany), lipase (15–25 units/mg) from Candida rugosa (Sigma-Aldrich, Bavaria, Germany), and cellulase (≥200 FPU/mL) from Trichoderma reesei (Novozymes A/S, Copenhagen, Denmark). Tris(hydroxymethyl)aminomethane-HCl (0.1 M, pH = 8.0, Sigma-Aldrich, Germany) and citric acid-sodium citrate (0.1 M, pH = 4.8, Sigma-Aldrich, Germany) were used as buffers for enzyme degradation, sodium azide (NaN3) (Sigma Chemical Co., St. Louis, MI, USA) was used as an antifungal agent, and calcium chloride (Sigma Chemical Co., USA) was used as an activator of enzyme degradation. Other chemical reagents were obtained from Sinopharm Chemical Reagent (Shanghai, China).
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5

Comparative Analysis of α-Amylases

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Human salivary α-amylase (HSA), porcine pancreatic α-amylase (PPA), Bacillus subtilis (BSA), and Aspergillus oryzae (AOA) were purchased from Sigma Co., St. Louis. Bacillus pacificusα-amylase (BPA) was purified as recently reported by Alonazi et al. (2020), and the two larval insect α-amylases from Tribolium confusum (AOA) and Callosobruchus maculatus (CMA) were obtained, as previously described by Hivrale et al. (2011).
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6

Antioxidant and Antimicrobial Assays

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Folin-Ciocalteu’s phenol, potassium phosphate monobasic and dibasic, xanthine, xanthine oxidase, allopurinol, and hydrochloric acid were obtained from Sigma-Aldrich Japan K.K., Tokyo, Japan. Aluminium (III) chloride hexahydrate, 1,1-diphenyl-2-picrylhydrazyl (DPPH), sodium acetate, acetic acid, dibutyl hydroxuytoluene (BHT), gallic acid, and quercetin were purchased from Kanto Chemical Co. Inc., Tokyo, Japan. Acetone, potassium peroxodisulfate, 2,2’-azinobis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) were obtained from Nacalai Tesque, Inc., Kyoto, Japan. Methanol (MeOH), ethyl acetate (EtOAc), ethanol, and methanol plus were obtained from Junsei Chemical Co., Ltd., Tokyo, Japan. All of the bacteria strains, including Escherichia coli, Proteus mirabilis, Staphylococcus aureus, and Bacillus subtilis, were purchased from Sigma-Aldrich (Tokyo, Japan).
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7

Bone Allograft Cube Biocompatibility Evaluation

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Bone allograft cubes were removed from the implanted site. After 1 and 3 days but also after 40 and 120 days the bone cubes could be manually separated from the surrounding tissue after careful preparation of the surrounding (bone) tissue by means of a (autopsy) bone saw (A1 Medical, Laurel, MS, USA). After removal of the allograft bone blocks, each allograft cube was placed centrally in Bacillus subtilis (Merck KGaA, Germany) in test agar pH 8.0 (Merck KGaA, Germany) inoculated agar plates and the test was performed as described in Section 2.4.1.
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8

Antimicrobial Susceptibility Testing

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Mueller-Hinton agar (Oxoid), hydrochloric acid (HCl), sodium hydroxide Na(OH)4, Bacillus subtilis (Merck Darmstadt, Germany, no. 64271), and Micrococcus luteus ATCC® 10240 strain were used.
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9

Antibiotic Susceptibility Assay

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Bacillus subtilis (Merck KGaA, Germany in Test Agar pH 8.0 Merck KGaA, Germany), Staphylococcus aureus ATCC 29213 (American Type Culture Collection, LGC Standards GmbH, Wesel, Germany) and methicillin-resistant Staphylococcus aureus MRSA DSM 46320 (Leibniz Institute DSMZ Deutsche Sammlung von Mikroorganismen und Zellkulturen— German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany) were used for antibiotic delivery and antibiotic susceptibility assays.
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