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10 protocols using hrp linked anti mouse igg antibody

1

Investigating Type I IFN Signaling Pathways

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Cells were seeded in six-well plates at a concentration of 5 × 105 per well in 1 mL of medium and transfected with miRNA mimics or miRNA inhibitors. The cells were stimulated with type I IFN (1000 U/mL) 24 h after transfection and the cells were lysed at the indicated time points. The proteins were extracted, separated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis, blotted, and probed with the specified primary antibodies directed against phosphorylated STAT1 (p-STAT1), STAT1, p-STAT2, STAT2, JAK1, PTP1B, p-P44/42 MAPK (ERK1/2), P44/42 MAPK (ERK1/2), p38 MAPK, p-p38 MAPK, and p-TYK2 (Cell Signaling Technology, diluted 1:1000); anti-STAT3, anti-p-STAT3, and anti-p-JAK1 (Santa Cruz Biotechnology, diluted 1:200); anti-TYK2 and anti-β-tubulin (Abcam, diluted 1:1000 and 1:5000, respectively). The secondary antibodies used were obtained from Cell Signaling: horseradish-peroxidase (HRP)-linked anti-rabbit IgG antibody (diluted 1:5000), and HRP-linked anti-mouse IgG antibody (diluted 1:4000). The signal was generated with SuperSignal® West Pico Luminol/Enhancer Solution (Pierce). We used Tanon 6600 Luminescent Imaging Workstation (Tanon Science & Technology, Shanghai, China) to scan the film. And band signal intensity was analyzed using Image J.
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2

Western Blot Analysis of Inflammatory Proteins

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Protein (20–50 μg) was extracted from the ipsilateral spinal cord dorsal horn and separated with 10% SDS-PAGE gel, transferred onto a nitrocellulose membrane, and incubated with antibody against CXCR4 (1:1000; ab124824, Abcam), VDUP-1 (1:1000; sc-271238, Santa Cruz Biotechnology), NLRP3 (1:500; NBP1-77080, Novus Biologicals), apoptosis-associated speck-like molecule containing CARD domain (ASC; 1:1000; sc-22514-R, Santa Cruz Biotechnology), Caspase1 (1:1000; ab-1872, Abcam), Caspase1 p10 (1:1000; sc-514, Santa Cruz Biotechnology), and IL-1β (1:1000; ab9722, Abcam) or control β-Actin (1:5000; YM3028, ImmunoWay). Blots were washed and incubated in HRP-linked anti-rabbit IgG antibody (1:5000; 7074, Cell Signaling Technology) and HRP-linked anti-mouse IgG antibody (1:5000; 7076, Cell Signaling Technology). Protein blots were visualized using Clarity ECL Substrates (Biorad).
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3

Western Blot Analysis of Proteins

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After the indicated treatment, HAECs were lysed using radioimmunoprecipitation assay (RIPA) buffer (Sigma-Aldrich, USA) containing protease and phosphatase inhibitors (Sigma-Aldrich, USA). Cytoplasm was removed using hypotonic buffer to obtain the nuclear extracts via lysis. Then, 20 μg cell lysates was immobilized using 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The protein mix was then transferred onto polyvinylidene fluoride (PVDF) membranes (Bio-Rad, USA) to separate the proteins according to size. The membranes were then blotted against their specific antibodies and corresponding secondary antibodies. The immunoblot bands were visualized using Pierce™ ECL Plus western blotting substrate (Catalog # 32132) [33 (link)]. The following antibodies were used: p-JNK (1:1000, # 9255, Cell Signaling Technology, USA); JNK (1:3000, #9252, Cell Signaling Technology, USA); LOX-1 (1:2000, ab214427, Abcam); KLF6 (1:1000, #AF3499, R&D Systems); β-actin (1:5000, #4970, Cell signaling technology, USA); HRP-linked anti-rabbit IgG antibody (1:2000, #7074, Cell signaling technology, USA); HRP-linked anti-mouse IgG antibody (1:2000, #7076, Cell Signaling Technology, USA).
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4

Melanogenic Protein Regulation by α-MSH

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B16F10 cells were treated with 1 μM of α-MSH and ethanol extracts for 48 h. After treatment, the cells were washed twice with PBS and lysed with RIPA buffer with protease inhibitor. Protein concentrations were determined using the Bradford assay (Bio-Rad, USA). Samples containing equal amounts of protein (40 μg/sample) were separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were blocked with 5% skim milk and incubated with a 1:1000 dilution of a rabbit polyclonal anti-tyrosinase antibody (Abcam, UK), a 1:2000 dilution of a mouse monoclonal anti-TRP-1 antibody (Abcam, UK), a 1:2000 dilution of a mouse monoclonal anti-TRP-2 antibody (Abcam, UK), a 1:10000 dilution of a rabbit monoclonal anti-GAPDH antibody (Cell Signaling Technology, Berverly MA), or a 1:1000 dilution of a rabbit monoclonal anti-MITF antibody (Cell Signaling Technology, Berverly MA). All bands were visualized using an HRP-linked anti-rabbit IgG antibody or an HRP-linked anti-mouse IgG, antibody (Cell Signaling Technology, Beverly, MA). Bound antibodies were detected using an enhanced chemiluminescence kit (Thermo Scientific, USA). Equal loading was assessed using an anti-GAPDH antibody to normalize the amount of total protein.
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5

Fungal Protein Extraction and Analysis

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For crude protein extractions, A. chrysogenum strains were grown in liquid MM for 24–144 h, as described above. The protein extraction procedure followed a conventional protein extraction method for filamentous fungi [38 (link)]. The protein concentration was determined for each sample using the Bradford assay [39 (link)]. Using 15 µg of protein from each fungal transformant, SDS-PAGE was performed with a 12% separation gel and 5% stacking gel, followed by standard procedure Western blot analysis. Anti-HA antibody (Sigma Aldrich; Burlington, VT, USA) and HRP-linked anti-mouse IgG antibody (Cell Signaling Technology; Frankfurt am Main, Germany) were used as the primary and secondary antibodies. The SuperSignal™ West Pico PLUS Chemiluminescent Substrate (Thermo Scientific; Dreieich, Germany) was used as the signal detection reagent, and imaging was performed by the Chemidoc XRS+ System (Bio-Rad; Hercules, CA, USA) with an exposure time of 5 s.
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6

Protein Expression Analysis Protocol

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Primary antibodies were against FUBP2 (ab150393, Abcam), c-Myc (ab32072, Abcam), RAD51 (ab133534, Abcam), BRAC1 (YT0519, ImmunoWay), GAPDH (60004-1-lg, Proteintech) and Vinculin (ab129002, Abcam).
Secondary antibodies were Cy3-labelled goat anti-rabbit IgG (H + L) (A-11035, Invitrogen), Alexa 488-conjugated anti-rabbit IgG (GB25303, Servicebio), HRP-linked Anti-rabbit IgG Antibody (7074 S, Cell Signaling Technology) and HRP-linked Anti-mouse IgG Antibody (7076 S, Cell Signaling Technology).
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7

Immunoblot Analysis of Mitochondrial Proteins

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Cells were homogenized using a TissueLyser II (Qiagen) in lysis buffer containing 50 mM tris-HCl (pH 7.4), 150 mM NaCl, 1 mM EDTA (pH 8.0), and 0.1% Triton X-100. The supernatants were obtained by centrifugation at 16,000g for 15 min, and the protein concentrations were measured using a protein assay dye. Protein (5 μg) from each sample was loaded onto 10% polyacrylamide gels and subjected to electrophoresis. The separated proteins were transferred onto a 0.45-μm nitrocellulose membrane at 400 mA for 2 hours. The membrane was blocked with 5% skimmed milk for 1 hour and then incubated with primary antibodies overnight at 4°C. After incubation with a horseradish peroxidase (HRP)–conjugated secondary antibody for 2 hours at room temperature, the membrane was visualized using the WesternBright ECL Spray (Advansta). The following antibodies were used for detection: CRIF1 antibody (Santa Cruz Biotechnology), Total OXPHOS Rodent WB Antibody Cocktail (Abcam), glyceraldehyde-3-phosphate dehydrogenase antibody (Cell Signaling Technology), HRP-linked anti-mouse IgG antibody (Cell Signaling Technology), and HRP-conjugated goat anti-rabbit IgG (H+L) (Bio-Rad).
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8

Glyceraldehyde-Advanced Glycation Identification

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Glyceraldehyde (GA) was purchased from Nacalai Tesque. Aminoguanidine (AG) was from Wako Chemical Industries, Ltd.. Camptothecin (CPT) was obtained from Sigma. The following antibodies were used in the present study: anti-caspase-3, anti-PARP (Cell Signaling Technology); anti-β-tubulin (Wako); and an anti-γH2AX antibody (Millipore). An anti-GA-AGE antibody was prepared and purified as described previously41 (link). A horseradish peroxidase (HRP)-linked anti-rabbit IgG antibody and HRP-linked anti-mouse IgG antibody were obtained from Cell Signaling Technology.
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9

Protein Expression Analysis by IB

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Protein expression levels were
determined by IB, as we described
previously.34 (link) Total proteins or membrane
proteins were extracted from SW 1353 cells using cell lysis buffer
for western and IP (Beyotime, China) or a Minute Plasma Membrane Protein
Isolation kit (Invent Biotechnologies, USA) according to the manufacturer’s
instructions. Since boiling can cause the aggregation of membrane
proteins, lysates were denatured at 65 °C for 30 min following
the addition of sample buffer as this prevented the aggregation of
membrane proteins. The primary antibodies used for IB were as follows:
anti-GLUT1 (Cell Signaling Technology; 1:1000), anti-SOX9 (Cell Signaling
Technology; 1:1000), anti-Nrf-2 (Cell Signaling Technology; 1:1000),
anti-hexokinase II (HK2, Cell Signaling Technology; 1:1000), anti-p-p70
S6K (Cell Signaling Technology; 1:1000), anti-β-actin (Cell
Signaling Technology; 1:1000), and anti- Na-K-ATP (Cell Signaling
Technology; 1:1000). The HRP-linked anti-rabbit IgG antibody (1:1000–1:2000)
and HRP-linked anti-mouse IgG antibody (1:1000–1:2000) were
obtained from Cell Signaling Technology.
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10

Histone and Protein Expression Analysis

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Whole cell lysates were prepared in RIPA buffer (Thermo) with protease inhibitor (Roche), and phosphatase inhibitor (Roche). For histone protein, cells were incubated with 0.5 Triton X-100 for 10 min, and pellets were incubated with 0.2 N HCl overnight at 4 °C. Protein concentration was determined by DC Protein Assay (Bio-rad), and equal amount of protein samples was used to perform SDS gel electrophoresis and transferred onto nylon membranes (Bio-rad). TBST with 5% skim milk was used for blocking. Incubation with primary antibody was performed at 4 °C for 16 h. The following antibodies were used: Cleaved-caspase3 (Cell Signaling, 9661), H3K27ac (Abcam, ab4729), H3K4me3 (Abcam, ab8580), H3K9me3 (Abcam, ab8898), H3 (Abcam, ab1791), phospho-STAT3 (Cell Signaling, 9145), STAT3 (ZooMAB, ZRB-1004 and Cell Signaling, 9139), E2F1 (Millipore, 05-376), H2AZ (Active Motif, 39113), HA (Proteintech, 51064-2-AP), Vinculin (Sigma, V9131) and β-actin (Sigma, A5316), HRP-linked anti-rabbit IgG antibody (Cell Signaling, 7074), HRP-linked anti-mouse IgG antibody (Cell Signaling, 7076). Quantification of protein expression was performed using Image J, and either Vinculin or β-actin was used as the loading control for protein normalization. Each assay was performed in triplicate.
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