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27 protocols using ryanodine

1

Calcium Modulation of Cellular Signaling

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Four to six hours after plating, experimental manipulations were carried out by changing culture medium. Calcium influx was increased by depolarizing with elevated extracellular K+ - 25 mM (25K) or 50 mM (50K) - as previously described 33 (link),34 (link). To decrease calcium influx, calcium-free culture media was used, in which DMEM was substituted with calcium-free DMEM (Life Technologies) with 1mM EDTA. Cadmium (Sigma-Aldrich), a non-selective voltage-gated calcium channel blocker, was added into the medium to a final concentration of 10 μM. Nifedipine (Sigma-Aldrich), an L-type Ca2+ channel blocker, was added to a final concentration of 1 μM. To disturb calcium release from internal stores, application of 100 μM Ryanodine (Sigma-Aldrich) or 2 μM Xestospongin C (Sigma-Aldrich) was used to block Ryanodine-sensitive channels or inhibit inositol-1,4,5-trisphosphate (IP3) receptors, respectively.
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2

Modulation of Cellular Signaling Pathways

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Zinterol, AACOCF3, GW5074, edelfosine (ET-18-OCH3), chelerythrine, 2-aminoethyl diphenyl borate (2-APB), KT5720, methyl-β-cyclodextrin, ryanodine, thapsigargin (Sigma Chemical).
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3

Bioluminescence Imaging of SCN Circadian Rhythms

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Both male and female mice were used in this study. For SCN slice cultures, 4- to 7-d-old PER2::LUC knock-in mice or PER2::LUC;Bmal1–/– mice were anesthetized by ketamine (Ketaset, Fort Dodge Animal Health) and decapitated. The hypothalamus block was dissected from the whole brain, and coronal slices were cut by a tissue chopper (Stoelting) to a thickness of 250 µm. Each SCN slice was cultured on a Millicell-CM membrane insert (EMD Millipore PICMORG50; Merck KGaA) in explant medium with low sodium bicarbonate (EML) [DMEM (Thermo Fisher Scientific, 12100046), supplemented with 350 mg/L sodium bicarbonate, 10 mM HEPES, 25 U/mL penicillin, 25 µg/mL streptomycin, 2% B-27 (Thermo Fisher Scientific, 17504-044), and 200 µM d-luciferin potassium salt (BioSynth L-8220; no phenol red, serum-free; pH 7.4].
Dispersed SCN neurons were obtained from neonatal (0- to 4-d-old) PER2::LUC knock-in mice. 1 × 105 cells were plated in a well of a glass bottom dish (MatTek P35G-1.5-10-C) and cultured as described previously (Welsh et al., 1995 (link); Liu et al., 2007 (link)). Tetrodotoxin (TTX) and ryanodine were purchased from Sigma-Aldrich (T5651).
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4

Purinergic Signaling Modulation in Cells

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From Sigma-Aldrich (St. Louis, MO, USA): Adenosine 5′-triphosphate disodium salt hydrate (ATP, A1852), DMEM (D6429), Hanks′ Balanced Salt Solution (HBSS, H4641), HEPES sodium salt (H7006), Monensin (M5273), Nystatin (N6261), Amiloride (PHR1839), Xestospongin C (X2628), MRS-2179 (M3808), U73122 (U6756), Thapsigargin (T9033), Ryanodine (559276), Carbenoxolone (C4790), 10Panx1 (SML2152), Bafilomycin A1 (19-148), Apyrase (A6237), Gap26 (SML3074). From Molecular probes (Eugene, OR, USA): Hoechst 33,342 (H1399), Propidium iodide (P1304MP). From Evrogene (Moscow, Russia): MMLV reverse transcriptase (SK022S), SYBR Green I PCR Master Mix (PK147L); Triethylammonium salt (TNP-ATP, Ann Arbor, MI, USA, 20902). From Thermo Fisher Scientific (Waltham, MA, USA): Fura-2AM (Cat. #F1221), Fetal Bovine Serum (10099141). Selenium nanoparticles (kindly provided by Dr. S.V. Gudkov, Prokhorov General Physics Institute of the Russian Academy of Sciences, Moscow, Russia).
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5

Pharmacological Reagents Procurement

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Ouabain was purchased from the International Laboratory USA (South San Francisco, CA, USA). 2-2-Aminoethoxydipheylborate (2-APB) and thapsigargin were purchased from Tocris (Bristol, UK). Nifedipine, ryanodine, zatebradine, and all chemical reagents used to setup buffer solutions were purchased from Sigma.
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6

Ryanodine-Mediated Contractile Suppression

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In the pharmacological experiments, ryanodine (Sigma-Aldrich) was added to the medium at final concentrations of 50, 100 or 200 μM. Culture medium was replaced with the prepared medium and EPS (3 ms duration, 1 Hz frequency) was applied just after the media change. The muscle contraction was recorded until the twitch contraction was completely suppressed. The displacement of the contractions was calculated using ViewPoint.
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7

Cardiac Ion Channel Pharmacology Assay

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Bay K 8644, veratridine, terfenadine, cisapride, anti-cTnT (1:400) antibody, E-4031 and verapamil were purchased from Abcam (Cambridge, MA, USA). Quinidine was from Tocris Bioscience (Bristol, UK). Nifedipine, 4-aminopyridine, fetal bovine serum (FBS), cytosine β-D-arabinofuranoside (ARA-C), poly-D-lysine and epinephrine, FLA-365, ryanodine, lamotrigine, carbamazepine, phenytoin and all inorganic salts were purchased from Sigma-Aldrich (St. Louis, MO, USA). Bovine serum albumin, DMEM/F12, Triton™ X-100, Alexa Fluor® 488-conjugated goat anti-rabbit were from ThermoFisher Scientific (Waltham, MA). The Ca2+ dye Fluo-8/AM was from TEFLab (Austin, TX, USA).
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8

Nanoscale Imaging of Cardiomyocyte Contractility

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Nanoscale imaging was performed 1 d after pAcGFP-actinin plasmid transfection. In experiments under electric field stimulation, 2 mM Ca2+-HEPES-Tyrode’s solution was used as the bathing solution, and myocytes were electrically stimulated (Serizawa et al., 2011 (link) and references therein). For experiments on cell-SPOC, myocytes were treated with 4 µM ionomycin (Sigma-Aldrich) to increase the Ca2+ permeability of the membranes. Then, they were bathed in Ca-SPOC solution (pCa 5.75 buffered by Ca2+/10 mM EGTA; see the Methods section of the online supplemental material) containing 4 µM thapsigargin (Sigma-Aldrich) and 200 µM ryanodine (Sigma-Aldrich). OM (Selleck) was initially dissolved in ethanol and diluted with 0.6 µM Ca-SPOC solution. The final concentration of ethanol was 0.1%, having no effect on cell-SPOC.
Except for the experiment on spontaneous beating (performed at 27 ± 0.5°C), all the mechanical experiments were performed at 36.0 ± 0.5°C in this study. When changes in [Ca2+]i were measured simultaneously with sarcomeric motion, the myocytes were bathed in the 2 mM Ca2+-HEPES-Tyrode’s solution containing 2 µM Fluo-4-AM for 20 min at 25 ± 0.5°C. Thereafter, the imaging experiments were performed at 36.0 ± 0.5°C.
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9

Biochemical Reagents and Compounds Protocol

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Eugenol (purity=99%), ryanodine, BDM, procaine, MgATP, disodium phosphocreatine,
EGTA, imidazole, methanesulfonic acid, calcium chloride, and creatine kinase were
purchased from Sigma Chemical Co. (USA). All other reagents were analytical grade and
were purchased from Merck (Germany).
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10

Inhibitors of Ca2+ Signaling and Antioxidants

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Ca2+ signaling inhibitors (Ca2+ chelator TMB-8, ER calcium channel blocker Ruthenium red, mitochondrial Ca2+ uniporter inhibitor Ryanodine) and antioxidant reagent, N-acetyl L-cysteine (NAC) were purchased from Sigma-Aldrich. NF-κB inhibitor, SN50 was purchased from Enzo Biochem, Inc. Antibodies against phospho-IκBα (Tyr-42), p50, actin and YY1 were purchased from Santa Cruz Biotechnology. Antibodies against Core and NS4B were purchased from Abcam. Antibodies against C-myc, Mcl-1, Cyclin D1 and MMP-9 and HRP-linked secondary antibody were purchased from Cell Signaling Technology.
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