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13 protocols using e cad

1

Quantitative Western Blot Analysis

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For western blot analysis, the visceral peritoneum and cells were homogenized in RIPA buffer and then centrifugated to get proteins in the supernatant. The proteins were subjected to SDS‐PAGE gel and transferred to a nitrocellulose membrane. Protein expression was analysed by western blot analysis with primary antibody against human/mouse vimentin (Santa Cruz Biotechnology, Inc., Dallas, TX, USA), Zo‐1 (Santa Cruz Biotechnology, Inc.), α‐SMA (Santa Cruz Biotechnology, Inc.), E‐cad (Santa Cruz Biotechnology, Inc.), Col I (Cell Signaling, Inc., Danvers, MA, USA) or CTGF (Santa Cruz Biotechnology, Inc.) and then incubated with an appropriate secondary antibody. After washing, the protein was visualized and quantified by BIO‐RAD ChemiDoc™ XRS+ with Image Lab™ Software. The relative protein levels of vimentin, Zo‐1, Col I, E‐cad, α‐SMA and CTGF were normalized to β‐actin.
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2

Immunohistochemical Analysis of C/EBPs in Tumor

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Cryosections (5 µm) of frozen tumor samples were fixed 5 min in ice-cold methanol and stained with hematoxylin and eosin by standard methods. For immunohistochemical detection of C/EBPs, methanol-fixed cryosections were washed in PBS, and permeabilized in 0.1% Triton X-100 (Sigma, St Louis, MO) in PBS for 10 min on ice. Sections were serially incubated in the following solutions: 3% normal donkey serum, 30 min, room temperature (RT); primary antisera, overnight, 4°C; PBS rinses, 5 min x 3; Cy3-conjugated donkey anti-rabbit IgG (Jackson ImmunoResearch, West Grove, PA, 1∶1500, for 4 h at RT), PBS rinse x1; mounting in Vectashield (Vector Lab, Burlingame, CA) under coverslips. Antisera for C/EBPα, C/EBPβ, C/EBPδ, E-cad (all from Santa Cruz Biotechnology, Santa Cruz, CA) and Ki67 (Thermo Fisher, Waltham, MA) were used at 1∶50 dilution in PBS.
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3

Western Blot Analysis of Kidney Proteins

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Whole kidneys were homogenized in ice-cold radioimmunoprecipitation assay lysis buffer, then centrifuged at 14,000× g for 25 minutes at 4°C prior to collection of the supernatants. The protein concentration was measured by Bradford’s method, and the supernatants were stored at −80°C. The cell lysates (50 µg of protein/lane) or whole HK-2 cell extracts (40 µg of protein/lane) were loaded, separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and transferred to polyvinylidenedifluoride membranes (Millipore, Billerica, MA, USA). The membranes were incubated overnight at 4°C with primary antibodies for CTGF (Abcam, Cambridge, UK), TGF-β1, collagen type I (Col1), α-SMA, TIMP-1, PAI-1, E-cad, or β-actin (Santa Cruz Biotechnology). Subsequently, the membranes were incubated with goat antirabbit IgG or goat antimouse IgG HRP conjugate, and then immersed in ECL Plus Western Blotting Detection Reagent (Amersham, Piscataway, NJ, USA) and exposed to Hyperfilm ECL (Amersham). The intensity of the bands was measured using Lab Works 4.5 software (UVP, Upland, CA, USA).
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4

Comprehensive Antibody Panel for EMT Analysis

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The following primary antibodies were used in this study: GAPDH, ZEB1, E-Cad, FoxM1, HELLS, Cyclin B1, Cyclin D1, Cyclin A, K14, β-catenin, ZEB1, BrdU, and p63 from Santa Cruz Biotech; GRHL2 (Abnova, Taipei City, Taiwan; H00079977-A01); N-Cad from BD Biosciences (San Jose, CA); FN and Snail from Sigma-Aldrich; p-Smad3 (ser423/425), p-Smad2 (ser465/467), Smad4, p-p38 (Thr180/Tyr182), p-Erk1/2 (Thr202/Tyr204), p-JNK (Thr183/Tyr185), p-p65 (Ser536), and Oct-4 from Cell Signaling Technology Inc. (Danvers, MA); hTERT and Sox2 from Abcam (Cambridge, MA); TGF-β from Novus (Littleton, CO); and PCNA from Calbiochem (San Diego, CA). Secondary peroxidase-conjugated anti-rabbit or anti-mouse antibodies were from Jackson ImmunoResearch Laboratories Inc. (West Grove, PA). Tmx and 4-NQO were purchased from Sigma-Aldrich, while TGF-β1 was from PeproTech Inc. (Rocky Hill, NJ). JNK selective inhibitor SP600125 was purchased from Sigma-Aldrich and MEk1/2 inhibitors U0126 and PD98059 were from Cell Signaling Technology Inc.
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5

Western Blot Analysis of EMT Markers

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Equal amounts of extracted proteins were resolved and transferred to nitrocellulose membranes. Each membrane was incubated with one of the following antibodies: HIF-1α (mouse monoclonal; Abcam, Cambridge, UK), N-CAD, E-CAD (mouse monoclonal; Santa Cruz Biotechnology, Dallas, TX, USA), CYCLIND1, active CAS3, SNAIL (rabbit polyclonal; Cell Signaling Technology, Beverly, MA, USA), and β-Actin (mouse monoclonal; Sigma-Aldrich). After incubating with appropriate horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG antibodies (Thermo Fisher Scientific, Pittsburgh, PA, USA) and enhanced chemiluminescence solution (Thermo Fisher Scientific), signals were captured with an image reader (LAS-3000; Fuji Photo Film, Tokyo, Japan). Protein bands were then analyzed by densitometry.
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6

Antibody-Mediated Detection of Catenins

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The following Abs were used: Ecad (sc-7870, Santa Cruz, Heidelberg, Germany), glutathione S-transferase (GST) (MA4-004; Thermo Fisher Scientific, Darmstadt, Germany), α-catenin (GTX22981, GeneTex, Irvine, CA, USA), β-catenin (sc-7199; Santa Cruz; 610153; BD Transduction Laboratories, Heidelberg, Germany), p120-catenin (sc-13957, Santa Cruz), α-tubulin (T9026, Sigma-Aldrich, Munich, Germany), and ZO-1 (61-7300, Thermo Fisher). CD97 was detected using Abs directed to its NTF (H00000976-B01P, Abnova, Taipeh, Taiwan; AF3734, R&D Systems GmbH, Wiesbaden, Germany; 21270971, ImmunoTools, Friesoythe, Germany; HPA013707, Sigma) or CTF (24 (link)).
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7

Immunofluorescence Assay for HIPK2, P53, and E-Cad

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Cells were fixed, permeabilized, and blocked with 3% BSA. The primary Abs HIPK2 (1:500; Sigma), P53 (1:300; Santa Cruz Biotechnology), E‐Cad (1:50; Santa Cruz Biotechnology) or flag (1:300; ABclonal) were incubated with the cells at 4°C overnight, followed by incubation with a fluorochrome‐conjugated secondary Ab (ABclonal) for 1 hour. Cell nuclei were stained with DAPI. Immunofluorescence signals were recorded by confocal microscopy, and the mean integrated optical density was processed using Image‐Pro Plus 6.0.
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8

Investigating rTsTryp's Impact on Gut Epithelium

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To investigate the rTsTryp degrading or down-regulating expression of gut epithelium TJs proteins and related pathways, soluble proteins from Caco-2 monolayers pretreated with 20 μg/ml rTsTryp at 37°C for 2 h were analyzed by western blotting as described before [14 (link),37 (link)]. Briefly, Caco-2 cell monolayers were incubated with rTsTryp at 37°C for 2 h, cell proteins were collected, and the cell lysates were separated by 10% SDS-PAGE and transferred subsequently onto PVDF membrane (Millipore, USA). The membrane was blocked with 5% skimmed milk in TBST for 1 h at 37°C, and cut into strips. Subsequently, the strips were probed overnight at 4°C with antibodies against ZO-1 (1:1 000, Servicebio, Wuhan, China), E-cad (1:200, Santa Cruz, USA), occludin (2 μg/ml, Santa Cruz), claudin-1 (2 μg/ml, Santa Cruz), PAR2 (1:1 000, Abcam, UK), p-ERK1/2 (1:1 000, Abmart, Shanghai), ERK1/2 (1:1 000, Abmart, Shanghai), GAPDH (1:1 000), and β-actin (1:2 000) (Servicebio). After washing with TBST, the strips were incubated with HRP -conjugated anti-mouse IgG or anti-rabbit IgG as secondary antibodies (1:10 000). Finally, the color of the strips was developed using an enhanced chemiluminescence kit (CWBIO, Beijing, China). The results for the above proteins were normalized using GAPDH as a loading control [4 (link),18 (link)].
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9

Protein Expression Analysis of A549 Cells

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Collected A549 and A549/GR cells were lysed in RIPA buffer (150 mM NaCl, 1% Nonidet p-40, 50 mM Tris, pH 8.0, and a protease inhibitor cocktail). Thirty micrograms of each sample was separated by SDS-PAGE and transferred to a nitrocellulose membrane (Bio-Rad, USA). Western blotting was performed with rabbit or mouse antibodies against Prx II: LF-PA0091 (AbFrontier, Seoul, South Korea), CD133: PA2049 (Boster Bio, CA, USA), Nanog: sc-293121, OCT3/4: sc-9081, Sox2: sc-365823 (Santa Cruz Biotechnology), VEGFR2: sc-6251, E-cad: sc-7870, Vimentin: sc-6260 (Santa Cruz Biotechnology), Shh: 2207 s, Gli-1: 3538 s, Notch 1: 3268 s (Cell Signaling Technology), CXCR4: YF-MA16239, STAT3: LF-MA30485,pSTAT3 (Tyr 705): LF-PA20474, pSTAT3 (Tyr-727): LF-PA20473 Hes-1: YF-MA11051, and β-Catenin: YF-MA10213 (AbFrontier). Protein expression levels were detected using Super signal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher, #34577).
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10

Molecular Profiling of LCSCs and Non-Stem Cells

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After the cell sorting, LCSCs (EpCAM+/CD133+) and non-stem cells (EpCAM/CD133) were seeded in 24-well plates as 35 × 103 cells/well. The next day, the cells were fixed with 4% PFA, rinsed with 1X PBS and then permeabilized using a 0.5% TritonX (#28313, Thermo Fisher Scientific). After the cells were incubated with a blocking buffer for 2 h at room temperature, staining was carried out using the following primary antibodies: EpCAM (VU1D9)-Alexa Fluor488 Conjugate (#cs5198, Cell signaling), E-CAD (#sc8426, Santa Cruz) and β-CAT (D10A8) (#cs8480, Cell Signaling). For the F-actin staining, the Phalloidin-iFlour 555 reagent (#ab176756, Abcam) was used. Cells were visualized using a confocal microscope (# LSM880, Zeiss).
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