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5 protocols using anti nrp2

1

Immunoblotting and Immunofluorescence Antibodies

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The following antibodies were used for immunoblotting and/or immunofluorescent imaging: anti-HA and anti-Flag M2 (both from Sigma-Aldrich), anti-NRP2 (from R&D Systems), anti-CD63 (clone NKI-C3, a kind gift from J. Neefjes), anti-TfR1 (clone 66Ig10, obtained from J. Hilkens), anti-α-DG (clone IIH6C4 from Millipore) and anti-CDK4 (clone C-22, from Santa Cruz Biotechnology). The corresponding horseradish peroxidase (HRP)-conjugated secondary antibodies were purchased from Bio-Rad Laboratories. Alexa Fluor-conjugated secondary antibodies were used for all immunofluorescent experiments (from Thermo Fisher Scientific).
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2

Immunohistochemical Analysis of Lymphatic Markers

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The following primary anti-human antibodies were used: sheep anti-podoplanin, goat anti- VEGFR-3, anti-LYVE-1, anti-PROX1, anti-ITGA9, anti-VEGFR-2, anti-NRP2, anti-podocalyxin and anti-GFP, all from R&D Systems, Minneapolis, MN. Mouse anti-human CD14 and anti-CD68 antibodies were from Santa Cruz Biotechnology, Dallas, TX and Thermo Fisher, Waltham, MA, respectively. Rabbit anti-acetylated histone H3 and anti-Ki-67 were from Upstate, Billerica, MA and Cell Signaling Technologies, Danvers, MA, respectively. Rabbit anti-mouse Lyve-1 and rat anti-Meca-32 antibodies were from AngioBio, Del Mar, CA, and BioXCell, West Lebanon, NH, respectively. Secondary antibodies conjugated to FITC, Cy3, DyLight 488, DyLight 549, and APC donkey anti-rabbit, anti-sheep, anti-rat, anti-mouse and anti-goat IgG were all from Jackson ImmunoResearch Laboratories (West Grove, PA).
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3

Western Blot Analysis of Protein Extracts

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Cells were washed twice with ice-cold phosphate-buffered saline (PBS) and lysed in JS buffer containing 50 mM Hepes pH 7.5, 150 mM NaCl, 5 mM EGTA pH 7.8, 10% glycerol, 1% Triton, 1.5 mM MgCl2, 1 mM dithiothreitol (DTT), 1 mM phenylmethylsulfonyl fluoride (PMSF). The protein concentration was determined using the Bio-Rad protein assay (Bio-Rad Laboratories, Inc., Hercules, CA). For Western blot analysis, proteins were separated on SDS–PAGE, gels were blotted onto Immobilon P (Millipore, Bredford, MA, USA) for 2 h and the membranes were blocked in 5% nonfat dry milk in Tris–buffered saline for 2 h or overnight before the addition of the antibody for 1 h. The primary antibodies used were: anti-GAPDH (Santa Cruz, CA), anti-PAX8 (kindly provided by R. Di Lauro) anti-Tubulin (Santa Cruz, CA) and anti-NRP2 (R&D SYSTEMS). The filters were washed three times in Tris–buffered saline plus 0.05% Tween 20 before the addition of horseradish peroxidase-conjugated secondary antibodies for 45 min. Horseradish peroxidase was detected with ECL (Pierce).
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4

Immunohistochemistry of Neural Markers

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Immunohistochemistry was performed according to the published procedure12 (link) using the following antibodies: anti-Nrp1 (1:500; R&D systems), anti-Nrp2 (1:500; R&D systems), anti-GFP (1:1,000; Clontech), anti-β-galactosidase (1:1,000; ICN Biochemicals), anti-OCAM (1:500; R&D systems), rabbit anti-Tbr1 (1:5,000; Abcam), rabbit anti-Tbr2 (1:5,000; Abcam), anti-BrdU (1:200; Abcam) and rabbit anti-Tbx21 (1:10,000; provided by Dr Yoshihara at RIKEN). Antibodies against Pcdh21 were generated by immunizing guinea pigs with KLH-conjugated synthetic peptides as described previously11 (link). Alexa fluor-conjugated secondary antibodies (Invitrogen) were used at 1:200 dilution.
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5

Immunodetection and Western Blotting Protocols

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For immunodetection: anti-Smad4 (#38454, 1:200, Cell Signaling), anti-Jagged1 (AF599, 1 μg/ ml, R&D systems), anti-α-SMA (CY3-SMA, #C6198, 1:200, Sigma), anti-pS6 (#5364, 1:200, Cell Signaling), IB4 (#121412, 10 μg/ml, Life Technologies), anti-FOXO1 (#2880, 1:100, Cell Signaling), anti-cMYC (#6340, 1:100, Millipore), anti-KLF4 (#AF3158, 1:200, R&D systems), anti-NG2 (#Ab5320; 1:200, EMD Millipore), anti-PH3 (#06570; 1:500, EMD Millipore), anti-EPHB4 (#AF446, 1:100, R&D systems), anti-UNC5B (#AF1006, 1:100, R&D systems) anti-NRP2 (#AF567, 1:100, R&D systems).
For western blotting: anti-ALK1 (7R-49334, 1:1000, Fitzgerald), anti-Smad4 (#38454, 1:1.000, Cell Signaling), anti-pAKT (#4060, 1:1.000, Cell Signaling), anti-AKT (#9272, 1:1.000, Cell Signaling), anti-pPTEN (#9549, 1:1.000, Cell Signaling) and anti-PTEN (#9188, 1:1.000, Cell Signaling) and anti β-ACTIN (#A1978 1:3000, Sigma).
Appropriate secondary antibodies were fluorescently labelled (Alexa Fluor donkey anti-rabbit, Alexa Fluor donkey anti-goat) or conjugated to horseradish peroxidase (Anti-Rabbit and Anti-mouse IgG (H+L), 1:8.000, Vector Laboratories).
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