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20 protocols using fitc gelatin

1

FITC-Gelatin Degradation Assay

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Coverslips were coated with FITC-gelatin (Invitrogen, USA), rinsed in DPBS and incubated at 37 oC in culture medium for 2 h. Cells were seeded on coated coverslips and incubated for overnight before fixation and staining with actin. Images were taken at eight fields per sample. Gelatin degradation was quantified using ImageJ software. The final gel degradation index was the average percentage degradation obtained from the ten fields36 (link)37 (link).
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2

Quantifying Matrix Degradation by Dendritic Cells

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Glass coverslips were coated with 10 μg ml−1 FITC-gelatin (Invitrogen) and cross-linked with 0.5% glutaraldehyde 41 . 2 × 105 DC were plated onto matrix-coated coverslips and incubated at 37°C to allow degradation, then fixed with 4% paraformaldehyde (MP-Biomedicals) in phosphate buffered saline and stained with TRITC-phalloidin (Sigma) to outline the cell area. Matrix degradation and cell area were quantitated using Imaris software and the ratio calculated.
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3

Quantifying Matrix Degradation by Dendritic Cells

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Glass coverslips were coated with 10 μg ml−1 FITC-gelatin (Invitrogen) and cross-linked with 0.5% glutaraldehyde 41 . 2 × 105 DC were plated onto matrix-coated coverslips and incubated at 37°C to allow degradation, then fixed with 4% paraformaldehyde (MP-Biomedicals) in phosphate buffered saline and stained with TRITC-phalloidin (Sigma) to outline the cell area. Matrix degradation and cell area were quantitated using Imaris software and the ratio calculated.
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4

Integrin-Mediated Cell Adhesion Assay

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In brief, coverslips were incubated with 0.15% glutaraldehyde/phosphate-buffered saline (PBS) for 10 min followed by PBS washes. A total of 100 μL of 1:9 FITC–gelatin (Invitrogen): 0.2% porcine gelatin was added. Coverslips were then washed in PBS and incubated 15 min in 5 mg mL−1 NaBH4. Coverslips were rinsed in PBS and incubated at 37 °C in 10% FBS/DMEM for 2 h. MDA-MB-231 cells were seeded on coverslips with or without WJ460. Cells were incubated for 12 h and processed for immunofluorescence.
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5

Rhodamine B-Alginate Conjugation Protocol

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Commercial FITC-gelatin was acquired from Invitrogen. The preparation of rhodamine B conjugated-alginate was as follows. First, rhodamine B (20 mg; Invitrogen) added to 2 mL DPBS; then, 1-ethyl-3-(3 (dimethylamino) propyl) carbodiimide (EDC; 40 mg; Thermo Fisher Scientific) and 1-hydroxy-2-line 5-pyrrolidine dione (NHS; 1.75 mg; Thermo Fisher Scientific) were added; the sample was incubated at room temperature (25 ± 1 °C) for 30 min. Ethylenediamine was subsequently added and the sample incubated for 12 h. After dialysis and freeze-drying, rhodamine B-ethylenediamine powder was dissolved in 1% alginate solution (2 mL) and adding EDC (10 mg). The solution was oscillated overnight at room temperature, dialyzed, and freeze-dried to obtain rhodamine B-alginate powder.
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6

Gelatin Degradation Assay with TSN

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This assay was performed as previously reported.42 (link) In brief, cells was pretreated with TSN for 24 h, and then seeded on each coverslip (precoated with 1:9 0.1% fluorescein isothiocyante (FITC)-gelatin (Invitrogen): 0.2% porcine gelatin) with different concentrations of TSN. After 12 h, immunofluorescence analysis was performed. Gelatin degradation was quantified using Image-Pro Plus 6.0 software.
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7

Visualizing Invadopodia and ECM Degradation

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For invadopodia, cells were fixed (4% paraformaldehyde), permeabilized (0.1% Triton X-100), blocked (1% BSA) and then stained with Cortactin antibody and DyLight-488-conjugated 2nd antibody. Cells were next incubated with Alexa-594-conjugated phalloidin (Invitrogen) followed by DAPI (Sigma) before microscopy. For ECM degradation, poly-L-lysine (MP Biomed) treated coverslips were coated with solution containing 1:9 ratio of 0.1% FITC-gelatin (Invitrogen) and 0.2% plain gelatin (Sigma) followed by crosslinking with 0.8% glutaraldehyde. After extensive wash, cells (0.6–1×105) were seeded and treated with 5 μM Batimastat (Sigma, 16 hr plus 4–8 hr after removal) or DMSO (8 hr) before immunofluorescence procedures. Images were taken at 10 random fields per sample (~100–400 cells) while degradation area was quantified by ImageJ as described [28 ].
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8

TBK1 Staining in CCA Cells

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CCA cells were seeded onto FITC-gelatin (Thermo Scientific) substrates in a 12-well plate. After 24 h of culture, cells were fixed with methanol and TBK1 was stained through immunefluorescence. Finally, images were acquired using a fluorescence microscope.
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9

Immunoblotting and Immunofluorescence Analysis of B Cells and Macrophages

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For Western blotting analysis, primary B cells, macrophages, or B cell lines were lysed in RIPA lysis buffer (MilliporeSigma, R0278) containing protease inhibitors (Thermo Fisher Scientific, A32963) and phosphatase inhibitors (Thermo Fisher Scientific, A32957). Antibodies used for blotting were from Cell Signaling Technology including anti-phospho-473-Akt (catalog 4060); anti-Akt (catalog 2920); anti-phospho-p44/42 MAPK (ERK1/2) Thr202/204 (catalog 9101); and anti-p44/42 MAPK (ERK1/2) (catalog 4695). Antibodies used for immunostaining included anti-Talin (MilliporeSigma, T3287), anti-Vinculin (Thermo Fisher Scientific, 700062), anti-HS-1 (Cell Signaling Technologies, 3890), and anti-ARPC1B (MilliporeSigma, HPA004832). Alexa-488 or -647 Phalloidin were from Thermo Fisher Scientific. siRNA for ARPC1B was from Horizon Inspired Cell Solutions (catalog L-012082-00-0005). Lipopolysaccharide was from MilliporeSigma (catalog L6511). FITC-gelatin was from Thermo Fisher Scientific (catalog G13187). Fluo-8 AM was from Abcam (catalog ab142773). SYK inhibitors BAY 61-3606 (Selleck) or R406 (AdooQ Bioscience) were used at 500 nM.
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10

FITC-Gelatin Coated Coverslips

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FITC-gelatin (Thermo Fisher Scientific Waltham, MA) was used to coat acid-pretreated 22 mm × 22 mm coverslips. Cells (1 × 103) were seeded on the FITC-gelatin-coated coverslips. The clear zone of FITC-gelatin was determined using an Olympus DP-80 microscope image system (Olympus, Tokyo, Japan). Images were quantitated by ImageJ software.
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