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50 protocols using p smad1 5

1

Protein Expression Analysis of C2C12 Cells

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C2C12 cells were lysed with an ice-cold radio immunoprecipitation assay lysis buffer containing protease and phosphatase inhibitor cocktails (Abcam, Cambridge, UK). Protein lysates were cleared by centrifugation at 4 °C for 15 min, and the supernatants were collected for further experiments. 30 μg total protein samples (each lane) mixed with loading buffer (Beyotime) were subjected to sodium dodecyl sulphate-polyacrylamide gel electrophoresis and then transferred to polyvinylidene fluoride membrane (Millipore, Burlington, MA, USA). Primary antibodies used to detect specific proteins were: MT1/2 (Abcam, ab95042; 1:1000 dilution), MT3 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-164990; 1:500 dilution), ALP (Abcam, ab229126; 1:1000 dilution), Runx2 (Abcam, ab236639; 1:1000 dilution), Osterix (Abcam, ab229258; 1:2000 dilution), Dlx5 (Abcam, ab109737; 1:3000 dilution), p-Smad1/5 (Cell Signaling Technology, Danvers, MA, USA, 9516; 1:1000 dilution), and GAPDH (Abcam, ab8245, 1:5000 dilution). After incubation with appropriate secondary antibodies, protein bands were visualized by using electrochemiluminescence reagent (Millipore), and images were captured by Amersham Image 600 system (GE Healthcare Life Sciences, Marlborough, MA, USA).
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2

Pulmonary Hypertension Mechanistic Insights

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SAA with a purity of >98% by HPLC analysis was provided by the Institute of Materia Medica (Beijing, China). SB431542, Hoechst 33342, monocrotaline (MCT) and 2',7'-dichlorofluorescin diacetate (DCFH-DA) were purchased from Sigma-Aldrich (Shanghai, China). Antibodies against CD31, α-SMA, HO-1, Nrf2, 3-nitrotryosine, TGFβ1 and Nox4 were purchased from Abcam (Cambridge, UK). Antibodies against p-Smad2/3, CD68, RhoA, p-Cdc42, Cdc42, p-Cofilin, p-Smad1/5 and eNOS were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibodies against GAPDH and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA).
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3

Evaluating BMP-2 Signaling in hBMSCs

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The hBMSCs were treated with scaffolds for 14 days, then the Cells were lysed in lysis buffer supplemented with protease and phosphatase inhibitor (Thermo Scientific, #78440, USA). Protein concentration was assessed by BCA (Cell Signalling Technology, USA). Equal amount of protein (20 μg/lane) was separated by 8–12% SDS-PAGE. Then protein was transferred to PVDF membrane (Millipore, USA), the non-specific signals were blocked with 5% (w/v) skim-milk at room temperature for 1 h. Afterwards, primary antibodies against GAPDH (1:1000, Cell Signaling Technology, USA), BMP-2(1:1000, Cell Signaling Technology, USA), p-Smad1/5 (1:1000, Cell Signaling Technology, USA) and Runx2 (1:1000, Cell Signaling Technology, USA) were incubated overnight at 4 °C. Horseradish peroxidase (HRP)-conjugated polyclonal goat secondary antibodies were then incubated for 2 h at room temperature. The protein bands were detected by electrochemiluminescence (ECL) method (Thermo Scientific, #34095). GAPDH was served as internal reference.
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Immunohistochemical Analysis of Mouse Tissue

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Mouse tissue frozen sections were fixed with 4% paraformaldehyde (10 minutes) and permeabilized with 0.5% Triton X‐100 (10‐15 minutes). To reduce non‐specific background staining, sections were blocked with 5% bovine serum albumin for 1 hour at room temperature. Then, sections were incubated overnight at 4°C with the following primary antibodies: Runx2 (1:100; Proteintech, Cat No. 20700‐1‐AP), P‐Smad1/5 (1:100; Cell Signaling, Cat No. 13820), OPN (1:100; Bioworld Technology, Cat No. BS1264), vimentin (1:100; Abcam, Cat No. 92547) and α‐SMA (1:600; Sigma, c6198). Next, Alexa Fluor 488 goat anti‐rabbit or CyTM3 (Jackson ImmunoResearch) was incubated for 1 hour at room temperature. DAPI staining was used to observe the nucleus. Then, fluorescent images were obtained using confocal laser scanning microscope (Carl Zeiss).
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5

Immunoblotting for Phosphorylated Smad Proteins

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Protein extracts were prepared with RIPA buffer, and equal amounts of protein were resolved by SDS-PAGE and then transferred to nitrocellulose membranes that were probed with antibodies against pSmad2 (1/200 dilution, Cell Signaling), total Smad (1/200 dilution, Cell Signaling), pSmad 1/5 (1/200 dilution, Cell Signaling), total Smad 1/5 (1/200 dilution, Cell Signaling) and a β-actin-HRP antibody (1:50,000 dilution; Sigma) used as a loading control. Densitometry was performed using ImageJ software and at least three independent experiments were performed for each condition.
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Protein Expression Analysis in Liver Tissue

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Liver tissue samples were prepared with RIPA buffer supplemented with protease and phosphatase inhibitors (Sigma-Aldrich, Heidelberg, Germany). Extracted proteins (40 μg/lane) were separated by electrophoresis using 4%–10% bis-tris gels and nitrocellulose membranes (GE Healthcare, Freiburg, Germany). Membranes were incubated with antibodies directed against phosphorylated STAT3 (at tyrosine705 (P-STAT3, Cat. No. 9145 L, Cell Signalling Technology)), STAT3 (Cat. No. 4904, Cell Signalling Technology), phosphorylated SMAD 1/5/8 (P-SMAD 1/5, Cat. No. 9516S, Cell Signalling Technology), SMAD1 (Cat. No. 6944, Cell Signalling Technology), Ferroportin (Cat. No. MTP11-A, Alpha Diagnostics) and α-tubulin (Cat. No. T6074, Sigma-Aldrich). Washed membranes were incubated with horseradish peroxidase–linked anti-rabbit or anti-mouse IgG (New England Biolabs, Frankfurt, Germany). Membranes were incubated with ECL-Plus (Bio-Rad, Munich, Germany), and chemiluminescence was detected with a ChemiDoc™ XRS+ (Bio-Rad, Munich, Germany). Densitometrical analysis was performed with Image Lab™ (Bio-Rad, Munich Germany).
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Immunoblotting Assay for Protein Expression

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Cells were lysed in SDS buffer (60mM TrisHCl pH 6.8, 5% glycerol, 2% SDS). Twenty-five to 50 μg of cell lysates were run on SDS-polyacrylamide gels, transferred to PVDF membranes (Millipore, Billerica, MA), and incubated 1 hour in a blocking buffer (5% Bovine Serum Albumin (BSA), 10 mM Tris–HCl, pH 7.6, 150 mM NaCl, and 0.1%Tween 20). Each membrane was incubated overnight against a specific antibody: SMAD2 (Cell Signaling), pSMAD2 (Cell Signaling), SMAD1 (Cell Signaling), SMAD5 (Cell Signaling), pSMAD1/5 (Cell Signaling), PAI-1(Santa Cruz Inc., Dallas, TX), VE-cadherin (Cell Signaling), Calponin (Millipore), PECAM1 (Abcam), SM22α (Abcam). After incubation with peroxidase conjugated secondary antibodies, detection was performed with enhanced chemiluminescence reagents (GE Healthcare, Sweden). Protein levels of GAPDH (R&D Systems, Minneapolis, MN) were used to normalize the results.
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Inducible caBmpr1a Osteoblast Isolation

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Generation of inducible caBmpr1a mice was reported previously.32 (link),33 (link)caBmpr1a mice were bred with P0-Cre35 (link) to activate caBmpr1a gene expression in a neural crest-specific manner and primary osteoblasts (both caBMPR1AQ233D and wild-type) were harvested from frontal bones of newborn mouse calvaria.33 (link) Osteoblasts were cultured in alpha-minimum essential medium (αMEM) supplemented with 10% fetal bovine serum (ATCC, Manassas, VA, 30–2020) and 1% penicillin/streptomycin (ATCC, 30–2300). When required, cells were passaged with 0.25% trypsin EDTA (Life Technologies, Carlsbad, CA, 25200–056). All cells used for experiments were at passage 4 or lower. To evaluate levels of BMP-Smad signaling, isolated osteoblasts were cultured with or without rhBMP2 at 100 ng/mL for 30 min. Levels of phospho-Smad1/5/8 were measured by Western blot using a rabbit antiphospho-SMAD1/5/8 (pSMAD1/5/8) (1:1000, 9511, Cell Signaling) (Figure S1).
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9

Quantifying Cellular Signaling Pathways

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The cells were washed two times with cold PBS, and the total protein was extracted using an RIPA lysis buffer. The protein concentration was quantified using a BCA Protein Assay Kit (Thermo Scientific, Rockford, IL, USA), and proteins were separated via 10% SDS-PAGE and transferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The transfer membranes were blocked with 5% fat-free milk at room temperature for 1 h and then incubated with primary antibodies against BMP2 (1 : 1000; Abcam, Cambridge, UK), ERK1/2, p-ERK1/2, JNK, p-JNK, p38, p-p38, IκBα, p-IκBα, p65, p-p65, p-Smad1/5, Smad1/5 and Smad4 (1 : 1000; Cell Signaling Technology) at 4 °C overnight. After three washes, the membranes were incubated with appropriate secondary antibodies that were conjugated with IRDye 800CW at room temperature for 1 h. Immunoreactive bands were detected using the Odyssey infrared imaging system (LI-COR, Lincoln, NE, USA). The GAPDH antibody (1 : 1000; Cell Signaling Technology) was used as a control. The intensity of each band was analyzed using the ImageJ software (Bethesda, MD, USA).
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10

Proteomic Analysis of DPSCs

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DPSCs were lysed and assayed with a BCA protein assay kit (Beyotime). Samples containing 15–30 μg of protein were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis, and the proteins were then transferred to polyvinylidene fluoride membranes (Millipore). The membranes containing the transferred proteins were blocked with 5% bovine serum albumin and reacted with the primary antibody overnight at 4℃. The membranes were then labeled with corresponding secondary antibody of horseradish peroxidase (HRP)-conjugated anti-mouse IgG or anti-rabbit IgG for 1 h at room temperature before visualization with SuperSignal enhanced chemiluminescence substrate (Thermo Fisher Scientific, Waltham, MA, US). Primary and secondary antibodies against the following proteins were used in this study: METTL3 (96391, 1:1000); METTL14 (51104, 1:1000); WTAP (56501, 1:1000); p-Smad1/5 (9516, 1:1000) were purchased from Cell Signaling Technology (CST, Danvers, MA, USA). NOG (sc-293439, 1:1000); RUNX Family Transcription Factor 2 (RUNX2, sc-390351, 1:1000); Dentin Sialophosphoprotein (DSPP, sc-73632, 1:1000); Smad1/2/3 (sc-7960, 1:1000); p-Smad3 (sc-517575, 1:1000) were obtained from Santa Cruz Biotechnology. GAPDH (60004-1-Ig, 1:3000); goat anti-mouse IgG (SA00001-1, 1:3000) and goat anti-rabbit (SA00001-2, 1:3000) were purchased from ProteinTech Group (ProteinTech, Wuhan, China).
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