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5 protocols using anti k8

1

Cryosectioning and Immunostaining of Cell-Printed Structures

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The cell-printed structure was harvested and fixed with a solution of 4% paraformaldehyde. The structure was embedded in optimal cutting temperature (OCT) compound (Sigma-Aldrich, USA) and sectioned 10-mm thick by using a cryotome (Leica, CM1950, Germany). The sliced samples were washed repeatedly with PBS solution to remove OCT compound and then permeabilized with a solution of 0.1% Triton X-100 (Sigma-Aldrich, USA) in PBS for 5 min. To reduce nonspecific background, sections were treated with 0.2% bovine serum albumin (Sigma-Aldrich, USA) solution in PBS for 20 min. To visualize iSGCs, sections were incubated with primary antibody overnight at 4°C for anti-K8 (1:300), anti-K14 (1:300), anti-K18 (1:300), anti-K19 (1:300), anti-ATP1a1 (1:300), anti-Ki67 (1:300), anti–N-cadherin (1:300), anti–E-cadherin (1:300), anti-CTHRC1 (1:300), or anti-TSP1 (1:300; all Abcam, UK) and then incubated with secondary antibody for 2 hours at room temperature: Alexa Fluor 594 goat anti-rabbit (1:300), fluorescein isothiocyanate (FITC) goat anti-rabbit (1:300), FITC goat anti-mouse (1:300), or Alexa Fluor 594 goat anti-mouse (1:300; all Invitrogen, CA). Sections were also stained with 4′,6-diamidino-2-phenylindole (Beyotime, Beijing) for 15 min. Stained samples were visualized, and images were captured under a confocal microscope.
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2

Immunofluorescence Staining of Cellular Markers

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Cells were fixed in 4 % paraformaldehyde and blocked for 30 min in 3 % BSA/PBS. All primary antibodies were diluted in blocking buffer (0.1 % BSA/PBS) and incubated with samples overnight at 4 °C. The cells were then incubated with fluorescently labeled secondary antibodies for 1 h. The cell nuclei were counter stained with DAPI (Southern Biotech, Birmingham, USA). All images were captured using a fluorescence microscope (Leica DM 2500). For hematoxylin-eosin staining, the gel was fixed in 4 % paraformaldehyde, dehydrated, and embedded in paraffin.
The primary antibodies used for immunohistochemistry were as follows: anti-EDA (Santa Cruz), anti-EDAR (Santa Cruz), anti-K8 (Abcam), and anti-CEA (eBioscience). The secondary antibodies used were anti-mouse-PE (Santa Cruz) and anti-rabbit-PE (Santa Cruz).
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3

ChIP and Immunoblot Antibody Panel

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The following antibodies were used in ChIPs and/or immunoblots: anti-histone H3 (Abcam ab1791), anti-H3K27me3 (Active Motif #39155), anti-H3K4me3 (Active Motif #39159), anti-EZH2 (Active Motif #39875), anti-RING1B (Abcam ab3832), anti-LANA (Advanced Biotechnologies #13-210-100), anti-CTCF (Millipore, #07-729), anti-RAD21 (Abcam, ab992), anti-SMC3 (Abcam, ab9263), anti-NIPBL (Bethyl Laboratories, A301-779A), anti-K8 (Abcam ab36617), anti-RNA polymerase II (RNAPII) (Abcam), and anti-actin (Abcam). Anti-K3 and anti-RTA antibodies were generous gifts from Drs. Jae U. Jung (University of Southern California) and Yoshihiro Izumiya (University of California, Davis).
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4

Transfection and Signaling Pathway Analysis

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RPMI-1640 medium, fetal bovine serum (FBS), phosphate-buffered saline (PBS), and antibiotics (penicillin and streptomycin) were purchased from Welgene Inc. (Seoul, Korea). Lipofectamine™ 2000 was purchased from Invitrogen (Carlsbad, CA, USA). JetPEI was purchased from Polyplus-transfection (Illkirch-Graffenstaden, France). SPC was purchased from Matreya (Pleasant Gap, PA, USA). PD98059, SP600125, and SB203580 were purchased from Calbiochem (La Jolla, CA, USA). Anti-YDJC, anti-K8, and the phosphospecific antibody to detect K8S431 were obtained from Abcam (Cambridge, MA, USA). Anti-ERK and the phosphospecific antibody to detect ERK1/2 antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). Anti-CDC16 and anti-β-actin antibody were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Alexa Fluor 488 goat anti-rabbit antibody and Alexa Fluor 594 goat anti-mouse antibody were obtained from Molecular Probes, Inc. (Eugene, OR, USA). All the chemicals were freshly prepared at the time of each experiment.
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5

Mammary Gland Immunofluorescence Assay

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Mammary glands were fixed in 4% PFA, paraffin-embedded and 5-μm sections were
used for immunofluorescence assay. Paraffin sections were microwave pretreated and
incubated with primary antibodies, then incubated with secondary antibodies
(Invitrogen) and counterstained with DAPI in mounting media. The following antibodies
were used: anti-K14 (Abcam), anti-K8 (Abcam), anti-E-cadherin (CST), anti-Msi2 (Novus
Biologicals), anti-Hes1 (Abcam), anti-Slug (CST).
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