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10 protocols using elx405 microplate washer

1

Quantification of M2e-specific Antibodies

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M2e-specific antibodies generated by immunized mice were measured by ELISA as described before[15 ]. Briefly, ninety-six well plates (Maxisorp, Nunc) were coated overnight at 4 °C with 50 μl of 5 μg/ml M2e peptide in phosphate buffered saline (PBS). Plates were blocked with 100 μl of 1% bovine serum albumin in PBS for 2 h at room temperature. Serum from individual mice was diluted 1:1600 or 1:400, added to wells, and incubated for 1 h at room temperature. Next plates were incubated with 50 μl of 1:4000 dilution of horseradish peroxidase (HRP)-labeled anti-IgG antibody for 1 h at room temperature. Plates were washed three times with PBST (0.05% tween 20 in PBS) between each step using ELx405 microplate washer (BioTek, VT). Color was developed with OPD as substrate. After 5-10 minutes, 50 μl of 3M phosphoric acid was added to terminate the reaction. Absorbance at 492 nm was recorded using SpectraMax Plus384 microplate reader (Molecular Devices LLC., CA).
For measurement of IgG1 and IgG2a subtypes, the above procedure was repeated with individual mouse serum diluted 1:1600 or 1:400, and by using horseradish peroxidase (HRP)-labeled anti-IgG1 and anti-IgG2a as secondary antibodies.
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2

Thallium Flux Assays for GIRK Channels

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Cell lines: Polyclonal rat mGlu2/HEK/GIRK, rat mGlu4/HEK/GIRK and rat mGlu4/mGlu2 HEK/GIRK cells were used for these studies. For dye loading, media was exchanged with Assay Buffer (HBSS containing 20 mM HEPES, pH 7.4) using an ELX405 microplate washer (Bio-Tek), leaving 20 μL/well, followed by addition of 20 μL/well 2× FluoZin-2 AM (164 nM final) indicator dye (Life Technologies, prepared as a DMSO stock and mixed in a 1:1 ratio with pluronic acid F-127) in Assay Buffer. After 1h incubation at room temperature, dye was exchanged with Assay Buffer, leaving 20 μL/well, and allowed to sit for 15 minutes. Thallium flux was measured at room temperature using a Functional Drug Screening System 7000 (FDSS 7000, Hamamatsu). Baseline readings were taken (2 images at 1 Hz; excitation, 470 ± 20 nm; emission, 540 ± 30 nm), and test compounds (2×) were added in a 20μL volume and incubated for 140 s before the addition of 10 μL of Thallium Buffer with or without agonist (5×). Data were collected for an additional 2.5 min and analyzed using using Dotmatics software (Bishops Stortford, Hertz, UK) using a four parameter logistical curve fit. For direct GIRK assays, methods were performed as described in 22.
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3

Immunocytochemical Staining of Oligodendrocytes

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At the experimental end point, medium was removed leaving 50 μl/well using an ELX405 microplate washer (BioTek, Winooski, VT, USA). Cells were then fixed for 14 min with paraformaldehyde solution to a final concentration of 4 %. Following fixation, plates were washed with 1 ml PBS leaving 50 μl/well using the microplate washer. Cells were then blocked in blocking buffer (10 % normal goat serum, 0.1 % Triton X-100), antibody buffer (150 mM NaCl, 50 mM Tris Base, 1 % BSA, 100 mM l-lysine, 0.004 % sodium azide, pH 7.4), and stained with mouse anti-rat MBP antibody and anti-rabbit Olig2 diluted in blocking buffer overnight at 4 °C. The cells were washed and incubated with secondary antibodies, and DAPI, 0.3 μM for 1 h at room temperature. After a final wash, 100 μl of PBS was added to each well and plates imaged. Images were captured with a Nikon Eclipse TE-2000-U microscope, Zyla cMOS megapixel camera (ANDOR Technology, Belfast, UK), fitted with an automated stage controlled by NIS Elements AR software 4.0 (Melville, NY, USA). An air 10X lens was used to capture four images per well with 16 bit resolution, 2560 × 2160 pixels. Images for each assay run were captured using identical camera settings. Images were exported as TIFF files for analysis and quantification.
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4

High-Throughput CHIKV Antiviral Screening

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U-2 OS cells seeded in 384-well plates (Corning) were treated with DMSO, 100 nM bafilomycin A1, or compounds from the NCC at a concentration of 1 µM using a Bravo automated liquid handling platform (Velocity 11/Agilent) and incubated at 37°C for 1 h. CHIKV SL15649 eGFP-expressing replicon particles were inoculated into wells of treated cells at an MOI of 5 infectious units (IU)/cell and incubated at 37°C for 20 to 24 h. Medium was aspirated using an ELx405 microplate washer (Biotek), and cells were incubated with Hoechst dye to stain nuclei using a Multidrop Combi reagent dispenser (Thermo Scientific). Cells and nuclei were visualized using an ImageXpress Micro XL imaging system. Total cells and infected cells were quantified using MetaXpress software in two fields of view per well. The plate median and median absolute deviation (MAD) were calculated for each well and used to calculate robust Z scores with the following equation: Z score = [log2(% infection) − log2(median)]/[log2(MAD) × 1.486]. Candidates were considered positive if the robust Z score was ≤−2 or ≥2 in at least two of three independent replicates.
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5

Automated Evaluation of Cellular Toxicity

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Cellular toxicity was evaluated using an automated format of the CellTiter-Glo Luminescent Cell Viability Assay (Promega) at the High-Throughput Screening Laboratory (Life Sciences Institute, University of Michigan). Cells were seeded overnight on 384-well plates at 37°C. Cell suspension was dispensed using a Multidrop 384 (Thermo Scientific) system. Seeding densities for different cell types were as follows: TC-1: 1 x 104 cells/well; Jaws II: 1.5 x 104 cells/well; RawBlue: 2.0 x 104 cells/well in 40 μL of media/well. 3-fold serial dilutions of NE were prepared in the respective cell culture medium, spanning a 100,000-fold concentration range (1–0.000017% NE (w/v)). Media was removed from the plates, and 40 μL of the NE dilutions were added to each well. Each condition was run in duplicate. Cells were incubated for 24 h at 37°C. Supernatant was aspirated with an ELx405 microplate washer (Biotek), and cells were washed with PBS (3x). 10 μL of CellTiter-Glo reagent was added to each well and incubated at RT for 15 min. Luminescence was measured on a PHERAstar plate reader (BMG LabTech). The IC50 was defined as the NE concentration (% w/v) at which there is 50% cell viability after 24 h of treatment.
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6

Identification of Epithelial Cells via Immunofluorescence

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We developed an immunofluorescence assay that allowed for the identification of epithelial cells using a cocktail of antibodies against cytokeratin 8 and cytokeratin 18. Cell cultures were first fixed with 3.75% formaldehyde for 30 min at room temperature (RT) and washed three times with PBS. The BioTek ELx405 microplate washer was used for all washing steps. The primary antibody CK8/18 cocktail (clone EP17/30, Dako, M3652) was diluted 1:100 in PBS with 1% goat serum and 0.1% Triton X-100 and incubated for 20–24 hr at 4°C. The wells were washed three times with PBS before the addition of an Alexa Fluor 647-tagged goat anti-rabbit secondary antibody (Life Technologies, A21245) at a 1:100 dilution in 1% goat serum and 0.1% Triton X-100. After overnight incubation at 4°C with the secondary antibody in the dark, Hoechst 33342 was added to the well at a final concentration of 4 μg/mL and incubated at RT for 2 hr in the dark. Finally, the wells were washed three times with PBS and stored in ∼50 μL of PBS with an aluminum cover to prevent room light excitation.
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7

Phage Display for ERBB2 Binding

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From the phage display selections, 20 clones were chosen to be examined for ERBB2 affinity and specificity in binding assays. Individual phages were amplified in 2 mL of NZY amine overnight and the supernatant containing the amplified phage was used for binding analysis. To Immulon 2HB 96-well microtiter EIA plates, 100 ng purified ERBB2 diluted in sodium bicarbonate buffer (pH 9.6) was added and incubated overnight at 4° C. The ERBB2-immobilized plates were aspirated and subsequently blocked for 2 h at room temperature with BioFx synthetic bock. Blocking buffer was removed, and phage supernatant was added to wells for incubation at room temperature for 1 h. Plates were washed 10x with 0.1% TBST using an ELx405 Microplate Washer (BioTek Instruments, Inc., Winooski, VT) and were then incubated 1 h at room temperature with polyclonal rabbit anti-phage antibody diluted 1:1000 in 0.1% TBST. The plates were again washed with 0.1% TBST, and polyclonal goat anti-rabbit horse radish peroxidase conjugated antibody (Santa Cruz Biotechnology, Dallas, TX) diluted 1:1000 in 0.1 % TBST was added and incubated for 1 h at room temperature. After this final incubation, plates were washed with 0.1% TBST before the addition of 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic-acid) to visualize captured phage. Following a 15 min incubation, absorbance at 405 nm was analyzed by plate reader.
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8

M2e-Specific Antibody ELISA Protocol

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M2e-specific antibodies in serum of the immunized mice were measured by ELISA as described before [18 (link)]. To determine M2e-specific serum antibody responses in a ferret, ninety-six well plates (Maxisorp, Nunc) were coated with 50 μl of 5 μg/ml M2e peptide in phosphate buffered saline (PBS) and stored overnight at 4 °C. Plates were blocked with 200 μl of 2x ELISA plate blocking buffer concentrate in distilled water for 2 h at room temperature. Serum from individual ferrets was diluted to 1:8, added to wells, and incubated for 1.5 h at room temperature. Next, plates were incubated with 50 μl of 1:500 dilution of HRP-labeled anti-IgG antibody for 1.5 h at room temperature. Plates were washed three times with PBST (0.05 % tween 20 in PBS) between each step using ELx405 microplate washer (BioTek, VT). Color was developed with OPD dissolved in phosphate-citrate buffer (pH 5.0) containing 0.03 % H2O2, as substrate. After 10 minutes, 50 μl of 3 M phosphoric acid was added to terminate the reaction. Absorbance at 492 nm was recorded using SpectraMax Plus384 microplate reader (Molecular Devices LLC., CA)
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9

ELISA Quantification of M2e-Specific IgG

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M2e-specific immunoglobulin G (IgG) in mouse sera was determined using enzyme-linked immunosorbent assay (ELISA) as described earlier.35 (link) A 96-well plate (MaxiSorpff -Nunc, Sigma Aldrich) was coated with 50 µL of 5 µg/mL M2e peptide in PBS and incubated at 4°C overnight. 100 µL of 3% bovine serum albumin in PBS was used to block the plate and the plate was incubated for 2 h at room temperature. Plate was washed thrice with PBST using ELx405 microplate washer (BioTek, VT, USA). Serum samples were then analyzed by adding 50 µL of serum (individual or pooled) to the plate and incubating the plate at room temperature for 1 h. Plate was then washed thrice with PBST and 50 µL of goat anti-mouse IgG or anti-mouse IgG1 or anti-mouse IgG2a labeled with HRP (1:4000 dilution in PBST) was added per well. Following incubation for 1 h at room temperature, the plate was washed thrice with PBST and color was developed with OPD as substrate. After 5– 10min, 50 µL of 3% phosphoric acid was added to terminate the reaction. Absorbance at 492 nm was recorded by SpectraMax Plus384 microplate reader (Molecular Devices, LLC, CA).
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10

Fungicide Analytical Standards Protocol

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Fungicide analytical standards were purchased from Sigma/Aldrich (Madrid, Spain). Stock solutions were prepared at 10 g L -1 in acetonitrile and kept at -20 ºC in amber glass vials. RAM-HRP was from Dako (Glostrup, Denmark). Costar flat-bottom high-binding polystyrene ELISA plates were from Corning (Corning, NY, USA). ELISA absorbances were read in dual wavelength mode with a PowerWave HT from BioTek Instruments (Winooski, VT, USA). ELISA plates were washed with an ELx405 microplate washer also from BioTek Instruments. Acetonitrile for LC-MS was obtained from Scharlau (Barcelona, Spain). o-Phenylenediamine was purchased from Sigma/Aldrich (Madrid, Spain).
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