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6 protocols using cooled ccd camera

1

Fluorescence Imaging of RNA Expression

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FISH images were obtained using an IX-71 microscope (Olympus) equipped with a 60 × NA1.0 Plan Apo objective lens, a cooled CCD camera (Hamamatsu), and image acquisition software (Lumina Vision Version 2.4; Mitani Corporation). For comparison of the effects of resveratrol, small interfering RNA (siRNA), and LNA treatments, identical image capture conditions were used within a set of experiments. Image stacks of 3D data sets were collected at 0.5–1.0-μm intervals through the z axis, subjected to projections. The signal intensity of RNA FISH was analyzed using a Cellomics CellInsight with HCS studio cell analysis software (Thermo Fisher Scientific).
FISH images in Fig. 2b were obtained with a confocal laser-scanning microscope (LSM 780, Carl Zeiss) equipped with ×63/1.4 Plan-Apochrome objective lens and a cooled CCD camera (Carl Zeiss). Images were acquired using the LSM software (Carl Zeiss).
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2

Fluorescence Microscopy Image Optimization

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Microscopic analyses were conducted using an epifluorescence Axiophot Zeiss system. Images were captured with a cooled CCD camera (Zeiss) and merged using Adobe Photoshop. The images were optimized for best contrast and brightness using the same program, but only those functions that treated all pixels in the image equally.
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3

Fluorescence In Situ Hybridization Imaging Cytometry

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Images were obtained with an IX-71 microscope (Olympus) equipped with a × 60 NA1.0 Plan Apo objective lens, a cooled CCD camera (Hamamatsu) and image acquisition software (Lumina Vision Version 2.4; Mitani Corporation). For imaging cytometry analyses of FISH, image stacks of three-dimensional data sets were collected at 0.5–1.0 μm intervals through the z axis, subjected to projections and used for automatic detection and counting of FISH signals with CELAVIEW RS100 software (Olympus) and Cellomics CellInsight (Thermo Fisher Scientific). Images in Figs 1c and 2c and Supplementary Fig. 1c were obtained with a confocal laser-scanning microscope (LSM 780, Carl Zeiss) equipped with × 63/1.4 Plan-Apochrome objective lens and a cooled CCD camera (Carl Zeiss). Image acquisition was done using LSM software (Carl Zeiss).
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4

Tracking BDNF Vesicle Dynamics in Neurons

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Images of neurons expressing fluorescent protein-tagged BDNF were captured using a Axio Observer Z1 fluorescence microscope system equipped with a Plan-Apochomat 40x/1.3 oil immersion objective and a Colibri LED light source (Carl Zeiss, Westlar, Germany). Time-lapse recordings were carried out 18–24 h after transfection of fluorescent protein-tagged BDNF plasmid. During time-lapse imaging, cultured neurons were perfused with the buffer containing (in mM): 120 NaCl, 1.2 KH2PO4, 2 CaCl2, 1 MgSO4, 30 glucose, and 20 N-2-hydroxyethylpiperazine-N’-2-ethanesulfonic acid (HEPES; pH 7.4), which was incubated at 37 oC. Sequential images were acquired using a cooled CCD camera (Carl Zeiss) with about 1 s interval and 200–600 ms exposure time. The movement of BDNF-fluorescent protein positive vesicles was analyzed by tracking the positions of EGFP or mCherry in dendrites as a function of time using the Axiovision software (Carl Zeiss).
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5

Immunocytochemical Analysis of Cell Markers

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Immunocytochemical analysis was carried out for the detection of cell-specific markers as previously described [10 (link)]. Briefly, paraformaldehyde-fixed cells or cryostat sections were incubated in phosphate buffered saline, containing 5% normal goat serum or normal donkey serum and 0%, 0.2%, or 0.4% Triton-X100, followed by an overnight incubation in antibodies at 4°C. The list of antibodies used is given as supplementary data (Table S2). Cells were examined for epifluorescence following incubation in IgG conjugated to Cy3/FITC. Images were captured using a cooled CCD-camera (Princeton Instruments NJ, USA) and Openlab software (Improvision, MA, USA). In some cases, images were acquired using a Zeiss ApoTome Imager M2 microscope (Axiovert 200M) and captured by cooled CCD-camera (Zeiss). Axiovision 4.8 software was used for further image processing. Quantification of specific marker is presented as percentage of total DAPI positive cells. Five fields of four chambers of chamber slide or three coverslips were counted per experiment. Results were derived from three separate experiments.
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6

Tracing Radial Glia Progenitors in MGE/PoA

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EGFP-expressing retroviruses were injected into the lateral ventricle at E11.5, E12.5, E13.5 and E14.5, respectively. Two days later, brains were processed and serially sectioned using a vibratome. Consecutive sections covering the entire MGE/PoA were collected, immunostained and mounted on gelatin-coated slides. All EGFP-labeled RGPs in the MGE/PoA of each section were traced using Neurolucida (MBF Bioscience) on an upright microscope equipped with epifluoresence illumination and cooled CCD camera (Zeiss). All traced sections were then aligned to recover the entire RGPs. At least six brains were analyzed for each time point. For the quantitative analysis, at least three animals for each condition were examined.
For each postnatal brain, the number of interneurons in the somatosensory cortex was stereologically analyzed on both hemispheres from four consecutive coronal sections using Neurolucida and Stereo Investigator (MBF Bioscience). Cortical laminar position was determined by cell packing density revealed by DAPI staining. Data were presented as mean ± s.e.m. and statistical significance was determined using Student's two-tailed t-test.
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