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9 protocols using ecl western blotting reagent

1

Western Blotting of Zebrafish Proteins

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SDS-PAGE gels were prepared using the Bio-Rad protein electrophoresis systems. Zebrafish embryos were homogenised in RIPA (50 mM Tris-HCl, 150 mM NaCl, 1% (v/v) NP-40, 0.5% (w/v) sodium deoxycholate, 1 mM EDTA, 0.1% (w/v) SDS) lysis buffer supplemented with protease inhibitor cocktail (Sigma-Aldrich) using a syringe and needle. Supernatants were collected after a brief centrifugation and boiled in 4X loading buffer (200 mM Tris-HCl (pH 6.8), 400 mM DTT, 8% SDS, 0.4% bromophenol blue and 40% glycerol) before loading. After transfer of proteins, membranes were rinsed with TBSTw (Tris Buffered Saline, 0.1% Tween-20) once and blocked in 5% skimmed-milk powder in TBSTw for 1 hour before incubation with primary antibody overnight. After incubation, membranes were rinsed 4X in TBSTw for 5 minutes and transferred to secondary antibody for 4 hours at room temperature, excess antibody subsequently removed by a further 4 washes in TBSTw for 5 minutes before detection with ECL Western blotting reagent (Bio-Rad) following manufacturer’s instructions. Signal detection was performed using a ChemiDoc MP Imaging system (Bio-Rad) or with CL-XPosure Film (34089, Thermo Fisher Scientific).
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2

Immunodetection of Amyloid Fibrils and Oligomers

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Aliquots containing 100 ng Ca2+-bound monomers and amyloids of Gad m 1 chains were spotted in duplicate on a nitrocellulose membrane. Immunodetection was performed by 1 h of incubation with anti-amyloid fibril OC (AB2286 Merck Millipore, 1/2000 dilution) and anti-amyloid oligomer A11 (AB9234 Merck Millipore, 1/2000 dilution) antibodies, followed by extensive washes and 30 min of incubation with horseradish peroxidase-labeled goat anti-rabbit IgG (1:5000 diluted; Sigma-Aldrich) [25 (link),26 (link)]. ECL Western blotting reagent (BioRad) and a ChemiDoc XRS instrument (BioRad) were used for signal development and detection, respectively.
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3

Influenza Virus Western Blot Assay

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MDCK cells were collected and lysed in CO-IP lysis buffer for 40 min. Then, the cells were centrifuged at 12,000 × g for 10 min at 4 C. Proteins were analysed by SDS-PAGE and then transferred to PVDF membranes (Bio-Rad, California, United States). Five percent milk solution was used to block the membrane at room temperature for 1 h, and then the membrane was incubated with the primary antibody overnight at 4 C. The protein signal was visualized using ECL Western blotting reagent (Bio-Rad, California, Unites States). The NP antibody and NA antibody used to detect influenza virus and the antibody to detect GAPDH were all purchased from GENE Tex (Southern California, Unites States).
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4

Western Blot Analysis of PrP Protein

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The samples were resolved using SDS-PAGE (13.5% acrylamide gels) and electrophoretically transferred onto PVDF. The membranes were blocked for 1 h in 5% (w/v) non-fat dried skimmed milk powder in Tris-buffered saline containing 0.05% Tween 20. After incubation with mouse anti-PrP POM17 and HRP (horseradish peroxidase)-conjugated goat-anti mouse antibody (Sigma-Aldrich, 1:5000), the signals were developed using an ECL-Western-blotting reagent (Bio-Rad) and detected using ChemiDoc XRS equipment.
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5

Immunoreactivity Assessment of rGad m 1 Variants

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The immunoreactivity of the rGad m 1 wt and mutant species was assessed by dot-blot analysis using the anti-amyloid fibril OC antibody (AB2286 Merck Millipore, 1/2,000 dilution) and sera from patients who are allergic to fish (1/10 dilution). Briefly, aliquots containing 50–100 ng of protein in the different states were spotted in duplicate on a nitrocellulose membrane. Immunodetection was performed by incubating the membranes with the primary antibodies for 1 h, followed by extensive washes and 30 min incubation with horseradish peroxidase-labeled either mouse monoclonal B3102E8 anti-human IgE (Abcam, diluted 1/2,000) or goat anti-rabbit IgG (Sigma, diluted 1/5,000). The signal was developed using the ECL-Western-blotting reagent (Bio-Rad) and detected with a ChemiDoc XRS instrument36 .
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6

Zebrafish Protein Analysis by SDS-PAGE and Western Blot

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SDS-PAGE gels were prepared using the Bio-Rad protein electrophoresis systems, zebrafish embryos were homogenised in RIPA (50 mM Tris-HCl, 150 mM NaCl, 1% (v/v) NP-40, 0.5% (w/v) sodium deoxycholate, 1 mM EDTA, 0.1% (w/v) SDS) lysis buffer supplemented with protease inhibitor cocktail (Sigma-Aldrich) using a syringe and needle. Supernatants were collected after a brief centrifugation and boiled in 4X loading buffer (200 mM Tris-HCl (pH 6.8), 400 mM DTT, 8% SDS, 0.4% bromophenol blue and 40% glycerol) before loading.
After transfer of proteins, membranes were rinsed with TBSTw (Tris Buffered Saline, 0.1% Tween-20) once and blocked in 5% skimmed-milk powder in TBSTw for 1 hour before incubation with primary antibody overnight. After incubation, membranes were rinsed 4X in TBSTw for 5 minutes and transferred to secondary antibody for 4 hours at room temperature, excess antibody subsequently removed by a further 4 washes in TBSTw for 5 minutes before detection with ECL Western blotting reagent (Bio-Rad) following manufacturer's instructions.
Signal detection was performed using a ChemiDoc MP Imaging system (Bio-Rad) or with CL-XPosure Film (34089, Thermo Fisher Scientific).
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7

Porphyra 334 and UPM Modulate Protein Expression in HaCaT Cells

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HaCaT cells were grown on 60 mm plates and treated with porphyra 334 (1, 10, or μm) or UPM (50 μg/mL) for 24 h. Cells were harvested and centrifuged at 15,928× g for five min. RIPA lysis buffer (Thermo Fisher Scientific, Waltham, MA, USA) containing a phosphatase inhibitor cocktail was used to lyse the cells. The cells were lysed, and the supernatant was removed. The recovered proteins were separated using 7–10% SDS electrophoresis before being transferred to a PVDF membrane (162-0177, Bio-Rad, Hercules, CA, USA). The membrane was then blocked with a 2% bovine serum albumin (BSA) solution for 1 h before being incubated with primary antibodies overnight at 4 °C. The membrane was washed thrice with Tris-buffered saline containing Tween 20 before being probed with secondary antibodies for 1–2 h at room temperature. The blots were visualized using ECL western blotting reagents (170-5061, Bio-Rad, Hercules, CA, USA).
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8

Protein Extraction and Western Blotting

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HaCaT cells were seeded in 60 mm dishes and treated as per the experimental plan. Protein samples were then prepared from the treated cells. For protein extraction, the cells were collected and centrifuged at 15,000 rpm for 50 min at 4 °C. Cell pellets were lysed using RIPA buffer (150 mM NaCl, 1% sodium deoxycholate, 25 mM Tris-HCl (pH 7.6), 1% NP-40, 0.1% SDS (9806s, CST, Danvers, MA, USA)) including phosphatase and protease inhibitor cocktail (5872s, CST, Danvers, MA, USA). Protein samples were quantified with a BCA assay kit (Thermo Fisher Scientific, Waltham, MA, USA) After that, the protein samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and transferred to polyvinylidene difluoride membranes (162-0177, Bio-Rad, CA, USA). The polyvinylidene difluoride membranes were blocked with BSA and exposed to antibodies. Finally, the proteins were measured using ECL Western Blotting Reagents (170-5061, Bio-Rad, CA, USA). Results were verified by repeating the experiment four times.
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9

Mitochondrial Protein Expression Analysis

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Western blot analyses were performed using whole fly or mitochondrial protein extracts according to the Cell Signaling Technology protocol (CellSignaling). Protein extracts were separated on 4–12% or 12% NUPAGE acrylamide gels (Invitrogren) and after transfer to PVDF membranes (Millipore) decorated with the following antibodies: Complex I-subunit NDUFS3 (Mitoscience MS112, dilution 1:1000), complex IV-subunit COX3 (Mitosciences, MS406, 1:500), complex V (Mitoscience MS504, dilution 1:5000) and VDAC (Mitoscience MSAO3, dilution 1:1000–2000). Protein bands were visualized with ECL western blotting reagents (Bio-Rad).
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