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7 protocols using anti cofilin

1

Cytoskeletal Regulation and Inhibitor Profiling

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Bovine serum albumin (BSA) A7906, progesterone, Coomassie brilliant blue-G, sennoside A, TRITC-labeled phalloidin, fluorescein isothiocyanate (FITC)-labeled PNA, phosphatase inhibitor cocktail P5726, and protease inhibitor cocktail P8340 were purchased from Sigma-Aldrich. Eosin Y was purchased from Biopack. Membrane-permeable Exo enzyme C3 Transferase (C4) was obtained from Cytoskeleton. CAS 1177865-17-6 was obtained from Merck. Cyclosporin A and OA were obtained from Cayman Chemical. Horseradish peroxidase (HRP)-conjugated anti-rabbit IgG and HRP anti-mouse IgG from Vector Laboratories. PF-3758309 from Medkoo Biosciences. Antibody anti-rabbit IgG-Alexa Fluor 568 from Invitrogen, Thermo Fisher Scientific; while anti-14-3-3 (pan 14-3-3 b8) from Santa Cruz Biotechnology. Anti-COFILIN, anti-phospho-SSH1 (pSSH1; Ser978), anti-phospho-LIMK1/2 (pLIMK1/2; Thr508), and anti-phospho-COFILIN (pCOFILIN; Ser3) antibodies were purchased from Cell Signaling. Anti-PAK4 from Proteintech. Anti-β-tubulin E7 was obtained from Developmental Studies Hybridoma Bank University of Iowa. PF-3758309, cyclosporine A, OA, and sennoside A were dissolved in DMSO; C4, CAS 1177865-17-6, and Eosin Y were dissolved in hexa-distilled water, and phalloidin-TRITC and PNA-FITC were dissolved in PBS.
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2

RhoA Signaling Pathway Regulation

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Y27632, Lucifer yellow and anti-Cx43 antibodies were purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-RhoA, anti-Rac1, anti-Cdc42, anti-RhoGDI, and anti-cofilin antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The anti-p190RhoGAP antibody was purchased from Millipore (Lake Placid, NY, USA). Anti-phospho-RhoA (Ser188), anti-phospho-LIMK1/2 (Thr508 and Thr505), anti-LIMK1, and anti-Cx43 antibodies were purchased from Abcam (Cambridge, MA, USA). The anti-phospho-cofilin antibody (Ser3) was obtained from Cell Signaling Technology (Danvers, MA, USA).
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3

Western Blot Analysis of Erythroblast Proteins

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Bone marrow and FLC-derived CD45 erythroblasts were lysed with protease inhibitors (Protease Inhibitor Cocktail Tablets, Roche), quantified, separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) using 10–12% polyacrylamide gels, and transferred to nitrocellulose membrane (Bio-Rad). Membranes were blocked for 1 h in TBST (10 mM Tris-HCl, pH 8.0; 150 mM NaCl; 0.05% Tween 20) containing 5% skim milk or 5% BSA, followed by overnight incubation with commercially available primary antibodies (anti-plek2 1:1000 (Proteintech, 11685-1-AP); anti-cofilin 1:1000 (Santa Cruz, sc-376476); anti-Rac1 1:1000 (Cell Signaling Technology, 2465); anti-VDAC1 1:1000 (Millipore, MABN504); anti-cytochrome c 1:1000 (Abcam, ab90529); and anti-GAPDH 1:4000 (Invitrogen)). Blots were washed and incubated for 1 h at room temperature (RT) with the secondary antibody (horseradish peroxidase (HRP) conjugated (Thermo Scientific)). Immunoreactive bands were visualized by the enhanced chemiluminescence (ECL) method (Amersham Bioscience) according to standard procedures. For mitochondria fractionation and activated Rac1 pull-down (Thermo Scientific, 89,874 and 16,118, respectively), samples were processed according to the manufacturer’s instructions.
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4

Cytoplasmic Protein Extraction for CAR Analysis

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Total protein lysates were generated with cytoplasmic and nuclear protein fractions by NE-PER nuclear and cytoplasmic extraction kit (#78835, Thermo Fisher Scientific) according to manufacturer’s instructions. CAR is a discussed pluripotency factor [22 (link)] and only cytoplasmic extracts were subjected to further analysis as only cytoplasmic CAR was considered relevant for CVB3-EGFP entry. Total protein concentration in the cell extracts was determined by standard Bradford assay to ensure equal loading in Western blot experiments. Unspecific binding during immunoblotting was blocked with 5% (w/v) nonfat dried milk powder in 0.1% Tween-20 in PBS. Primary antibodies were used for overnight incubation of the PVDF membrane at the following dilutions: anti-CAR (H-300, #sc-15405, Santa Cruz Biotechnology) and anti-cofilin (#sc-5279, Santa Cruz Biotechnology) at 1:200. An incubation with horseradish peroxidase-conjugated secondary antibodies was followed by detection through chemiluminescence (Western Lightning Plus-ECL, Perkin Elmer) on a C-DiGit®-Blotscanner (LI-COR Biosciences, Lincoln, NE, USA).
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5

Protein Expression Analysis in Cortex

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Both adult and E15 embryonic dorsal cortex and primary cortical neuron lysates were collected in radio immunoprecipitation assay (RIPA) buffer (50 mM Tris-HCl; 1% NP-40; 0.25% Na-deoxycholate; 150 mM NaCl; 1 mM EDTA, pH 7.4) with protease inhibitors (Protease Inhibitor Cocktail, Sigma) and phosphatase inhibitors (1 mM Na3VO4; 1 mM NaF) on DIV 3. All samples were loaded onto 10% SDS-PAGE gels and transferred to 0.45 μm PVDF Immobilon®-FL membranes (EMD Millipore). After incubation with Odyssey blocking buffer (LI-COR Biosciences) for 1 h at room temperature, the membranes were incubated with the following primary antibodies overnight at 4 °C. The primary antibodies were anti-pY99 (1:1000, Santa Cruz), anti-pY416 (1:1000, Invitrogen), anti-pan Src antibody (1:1000, Millipore), anti-Dab1 (1:1000, Sigma), anti-p-Cofilin (Ser3, 1:1000, Invitrogen), anti-Cofilin (1:1000, SantaCruz) and anti-GAPDH (1:2000, UBPBio) were used as loading controls. Appropriate secondary antibodies IRDye® 800CW and IRDye® 680RD (LI-COR Biosciences) were used, and membranes were scanned using the Odyssey® CLx system (LI-COR Biosciences).
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6

RhoGTPase Signaling Pathway Analysis

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Bovine serum albumin (BSA), Y27632, and the anti-β-actin antibody were purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-RhoA, anti-Rac1, anti-Cdc42, anti-RhoGDI, and anti-cofilin antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). NGF and the anti-p190RhoGAP antibody were purchased from Millipore (Lake Placid, NY, USA). Anti-p-RhoA (S188), anti-p-LIMK1/2, anti-LIMK1, and anti-LIMK2 antibodies were purchased from Abcam (Cambridge, MA, USA). The anti-p-cofilin antibody was obtained from Cell Signaling Technology (Danvers, MA, USA).
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7

Immunoblotting of Mitochondrial Proteins

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Immunoblotting was performed according to standard methods using the following commercially available antibodies: anti-CRIF1 (sc-134882; Santa Cruz), anti-NDUFA9 (A21344; Molecular Probes, Eugene, OR, USA), anti-SDHA (A11142; Molecular Probes), anti-UQCRC2 (A11143; Molecular Probes), anti-COX1 (A6403; Molecular Probes), anti-ATP5A1 (A21350, Molecular Probes), anti-actin (sc-1616, Santa Cruz), anti-F-actin (ab205, Abcam, Cambridge, UK), anti-α-actinin-4 (sc-134236, Santa Cruz), anti-synaptopodin (sc-21537, Santa Cruz), anti-cofilin (sc-33779, Santa Cruz), anti-ZO-1 (sc-10804, Santa Cruz), and anti-nephrin (sc-32532, Santa Cruz).
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