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8 protocols using gv354 vector

1

SAV1 Promoter Luciferase Reporters

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The recombinant luciferase reporter plasmids with different fragments of SAV1 promoter were constructed using the GV354 vector, a dual-luciferase plasmid containing both firefly luciferase gene and Renilla luciferase gene, was obtained from Shanghai Genechem. First, the different DNA fragments containing the TEAD binding site locating in SAV1 promoter were cloned using PCR. Then, the target fragment was cloned into GV354 using T4 DNA ligase. The recombinant luciferase reporter plasmids were verified by the DNA sequencing of Huada Genomics Institute (BGI, Guangzhou, China).
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2

Characterizing miR-19a Regulation of PTEN

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The promoter region of miR-19a was fragmented from the distal side to near side and fused with the cDNA of the Firefly and Renilla luciferases in the GV354 vector (GeneChem). All the constructed vectors were identified by sequencing. HEK-293T cells were sorted in 24-well plates in a 37°C incubator with 5% CO2 at 5 × 104 cells per well. The vectors above were delivered into cells and maintained at 37°C for 12 h. The activity of Firefly and Renilla luciferase was examined on a dual-luciferase reporter gene detection system (Promega, Madison, WI, USA). The PTEN 3′UTR containing the wild-type (WT) binding sequence with miR-19a and the corresponding mutant-type (MT) sequence were constructed and inserted into pGL3 promoter vectors to construct pGL3-PTEN-WT and pGL3-PTEN-MT luciferase reporter vectors. After that, the miR-19a mimic or control was cotransfected with 500 ng pGL3-PTEN-WT or pGL3-PTEN-MT vectors into 2 × 104 cells, and 50 ng pRL-SV40 Renilla luciferase vector was cotransfected as well to examine the transfection efficacy. After 48 h, the relative activity of Firefly and Renilla luciferase was examined using the dual-luciferase reporter gene detection system again.
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3

SIRT1 Promoter Regulation Assay

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The wild type (WT) and mutated (MUT) sequence of SIRT1 promoter region was fragmented from distal end to proximal end and constructed with firefly and Renilla luciferase cDNA into GV354 vector (GeneChem, Shanghai, China), respectively. HEK-293T cells were seeded into 24-well plates at the density of 5 × 104 cells/per well 24 h before transfection, and extracted constructs were then co-transduced with oe-NC/oe-FOXQ1 plasmids into cells, followed by12-h incubation at 37°C. Dual-luciferase reporter analysis was performed according to the manufacturer’s instructions (Promega, Madison, Wisconsin) and the luciferase activity of firefly and Renilla luciferases was evaluated using the dual luciferase reporter assay system (Promega, Madison, Wisconsin). The ratio of firefly luciferase activity to Renilla luciferase activity indicated the relative activity of luciferase.
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4

Lentiviral Modulation of SIRT1 in CRC

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Lentiviruses were used to generate cells with SIRT1 overexpression or downregulation. Based on the protein expression levels of SIRT1 in several CRC cell lines (Additional file 1: Figure S1A), HCT116 cells were stably transfected with an empty vector (Con077) or SIRT1-shRNA (GeneChem, Shanghai, China). SW480 cells were stably transfected with an empty vector (Con195) or lenti-SIRT1 (GeneChem, Shanghai, China). The transfected cells were then screened with puromycin (4 μg/mL) for several passages. SIRT1 promoter luciferase reporter plasmids (truncated SIRT1 promoter sequences and mutated 100 bp promoter sequences inserted into the GV354 vector, GeneChem, Shanghai, China) as well as EGR1, Sp1 and USF2 overexpression plasmids (constructed using GV230 and GV141 vectors, GeneChem, Shanghai, China) were transiently transfected into HEK-293T cells with Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA).
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5

Luciferase Assay for TCF7L2 m6A Regulation

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Wild-type sequences containing the m6A site of TCF7L2, mutant sequences with point mutations at the m6A site of TCF7L2, and truncated and full-length sequences of the METTL3 promoter region were synthesized and cloned into the XhoI location of the GV354 vector (Genechem, Shanghai, China). HEK293T, A498, or 786-O cell lines were cultured in 12-well plates and incubated until they achieved 60% confluence during a 24-h period. The reporter plasmid (100 ng) was co-transfected with specific siRNA or overexpression plasmids using Lipofectamine 3000. After 48 h, a luminescent substrate for firefly and Renilla luciferase was added, and a luminometer (Promega, Wisconsin, USA) was utilized to detect the luciferase activities. The relative luciferase activity was estimated by standardizing the firefly luciferase intensity to the Renilla luciferase intensity.
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6

DUB3 Promoter Regulation by KLF4

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DUB3 promoter fragments were cloned into the GV-354 vector (Genechem, Shanghai, China). The KLF4-overexpressing or control cells were transfected with GV-354-DUB3-promotor reporter plasmids. At 48 h after transfection, a dual-luciferase reporter assay was conducted using the dual-luciferase reporter assay system (E1910; Promega, Madison, WI, USA) according to the manufacturer’s protocol. The luciferase activity was measured using GloMax 96 microplate luminometer (Promega). The firefly luciferase enzyme activity was normalized to the Renilla luciferase enzyme activity.
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7

Regulation of ENO2 Promoter Activity

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ENO2 promoter regions were synthesized and cloned into the XhoI site of the GV354 vector (Genechem, Shanghai, China). A498 cells were seeded in 24-well plates and allowed to reach 70% confluence on the following day. The reporter plasmid (100 ng) was co-transfected with ENO2 siRNA using Lipofectamine™ 3000. The luciferase activities of firefly and Renilla were measured using the dual luciferase reporter system (Promega, Madison, WI, USA).
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8

SIRT1 Promoter Activity Profiling

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SIRT1 promoter region sequences were segmented from distal to proximal and fused with firefly and Renilla luciferase cDNA in a GV354 vector (GeneChem, Shanghai, China). All constructs were verified by sequencing. HEK-293T cells were seeded in 24 wells at a density of 5 × 104 cells per well 24 h before transfection. These constructs were then transfected into cells and maintained at 37 °C for 12 h. Dual-luciferase reporter assays were performed in accordance with the manufacturer’s instructions (Promega, Madison, WI, USA), and firefly and Renilla luciferase activities were assessed using a dual-luciferase reporter assay system (Promega, Madison, WI, USA). Three duplicate wells were used for each sample, and each sample was analyzed three times. The ratio of firefly luciferase activity to Renilla luciferase activity was used to indicate the relative luciferase activity.
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