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6 protocols using hybond p 0.45 pvdf

1

Immunoblot Analysis of Cellular Proteins

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Immunoblot analysis was previously described (59 (link)). Briefly, confluent cells or exosome pellet was lysed in cold lysis buffer (10 mm Tris-HCl, pH 7.5, 100 mm NaCl, 10 mm EDTA, 0.5% Triton X-100, 0.5% sodium deoxycholate) for 10 min. Aliquots of lysates were incubated with PK for 30 min at 37 °C; PK was stopped by addition of proteinase inhibitors (0.5 mm Pefabloc) and directly precipitated with methanol. For samples without PK treatment proteinase inhibitors were added directly and precipitated with methanol. Precipitated proteins were resuspended in TNE buffer (50 mm Tris-HCl, pH 7.5, 150 mm NaCl, 5 mm EDTA). For the gradient, the PK digestion was carried out after the fractionation. The samples were run on 12.5% SDS-PAGE, electroblotted on Amersham Biosciences Hybond P 0.45 PVDF (Amersham Biosciences, 10600023) and analyzed in immunoblot, using the Luminata Western Chemiluminescent HRP Substrates (Millipore, WBLUF0100).
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2

Liver Protein Extraction and Western Blot Analysis

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Approximately 20 mg of liver was shortly homogenized in 700 μl lysis buffer (50 mM Tris-HCl [pH 6.8], 10% glycerol, 2.5% SDS, 10 mM beta-glycerolphosphate, 10 mM NaF, 0.1 mM NaOrthovanadate, 1 mM PMSF, and 1x protease inhibitor cocktail) and treated with benzonase (Sigma E1014). Protein concentration was determined using the Pierce BCA protein assay kit (Thermo Fisher 23225). A total of 80 μg protein was mixed with laemmli buffer and separated by SDS-PAGE and blotted onto a PVDF membrane (10600023, Amersham Hybond P0.45 PVDF, lot#G9889898). The membrane was probed with primary antibody against GR (sc-1004, Santa Cruz), FOXO1 (sc-11350, Santa Cruz), TFIIB (sc-225, Santa Cruz) or β−Tubulin (05–661 Merck Millipore), and secondary HRP conjugated antibody (DAKO).
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3

Western Blot Analysis of Std Fimbriae

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E. coli StdOFF and E. coli StdON were grown in LB broth supplemented with carbenicillin (50 μg/ml) and to induce std fimbrial expression anhydrotetracycline (100 ng/ml) at 37°C until an OD600 of 0.6 was reached. 108 bacteria were pelleted, resuspended in PBS, mixed with an equal volume of Laemmli buffer supplemented with 10% DTT, and boiled for 10 min. These whole-cell lysates were spun down and supernatants were loaded immediately onto a SDS-PAGE gel (15%). Proteins were transferred to Hybond-P 0.45 PVDF (Amersham) membranes using a Trans-Blot semi-dry transfer cell (Bio-Rad). After blocking with Roti-block (Carl Roth), membranes were incubated first with anti-StdA [38 (link)] serum (Humphries et al., 2003) diluted 1:500 in blocking buffer, and then with a goat anti-rabbit-HRP conjugate, and finally with Pierce ECL Western Blotting Substrate (Thermo Fisher Scientific). Images were obtained using the ImageQuant LAS 4000 system (GE Healthcare).
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4

Immunoblot Analysis of Protein Samples

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Immunoblot analysis was performed as previously described27 (link). Briefly, confluent cells were lysed in lysis buffer. The lysates were incubated with 20 µg/ml PK for 30 min at 37 °C, the digestion was stopped with 0.5 mM Pefabloc and methanol precipitation was done. For non-PK digested samples (-PK), Pefabloc was added directly and precipitated with methanol. Pellets were re-suspended in TNE buffer. For brain homogenates, 50 µg/ml of PK was used for 1 h at 37 °C, followed by adding the sample buffer. Samples were run on 12.5% SDS-PAGE, electro-blotted on Amersham Hybond P 0.45 PVDF.
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5

Quantitative Analysis of Viral Proteins

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Total proteins were separated by 12% SDS-PAGE and transferred to membrane (Amersham Hybond P 0.45 PVDF). Ponceau S staining was carried out for visualizing total proteins and confirming equal loading and transfer prior to proceeding with blotting. HA-tagged CP and CP-RTD were detected by blotting with Anti-HA-peroxidase high affinity (3F10) rat monoclonal antibodies (Roche) at 1:2000 dilution. CP and CP-RTD bands were detected using ECL Select western blotting detection reagent (GE Healthcare) and captured through MicroChemi imager (DNR Bio-Imaging Systems). Detected viral protein bands were quantified using QuantityOne software. Three independent repeats of pea protoplast infections/western blotting were carried out and means with SE were calculated. Rel. RT levels were calculated as described for in vitro translation assays.
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6

Western Blot Analysis of Sorghum, Cassava, and Cotton Proteins

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Total protein was extracted from sorghum, cassava, control plants and PCR positive non-infiltrated cotton leaves (Fig. 3). For Western blotting (Trans Blot Turbo transfer system) 40 μg of total protein was transferred on Amersham Hybond-P 0.45 PVDF blotting membrane, as per manufacturer's instructions. Amersham Hybond-P 0.45 PVDF, a 0.45 μm pore size polyvinylidene difluoride (PVDF) hydrophobic membrane, is used with standard colorimetric and chemiluminescent detection methods for proteins. Blots were probed with primary polyclonal antibodies raised in rabbit for SbDhr2 and MeHNL proteins, detected with horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG antibody, and chemiluminescence was performed using Pierce™ ECL Western blotting substrate as per manufacturer's instruction. Membranes were exposed to Xray film, then developed and fixed.
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