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11 protocols using avidin from egg white

1

Chemo-Enzymatic Synthesis of Heparan Sulfate Oligomers

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All chemicals and solvents (ammonium acetate, methanol, water, and formic acid) were of HPLC grade and purchased from Sigma-Alldrich, (St. Louis, MO). Human recombinant FGF 1 expressed in Escherichia coli was a gift from Amgen (Thousand Oaks, CA, USA). Protein calibrants (myoglobin from equine heart, cytochrome c from equine heart, avidin from egg white, concanavalin A from Canavalia ensiformis, and bovine serum albumin) were purchased from Sigma-Aldrich. HS dodecasaccharides were chemo-enzymatically synthesized as previously described [45 (link)]. HS tetrasaccharides were synthesized as previously described based by fluorous supported modular synthesis [46 (link)].
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2

Heparin-binding Protein Characterization

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All chemicals and solvents (ammonium acetate, methanol, water and formic acid) were of HPLC grade and purchased from Sigma-Aldrich. AT III was purchased from Aniara/Hyphen Biomed as lyophilized powder (West Chester, OH). Stock solution of ATIII was made by dissolving the lyophilized protein into HPLC-grade water and then stored at −80 °C. Arixtra was purchased from the hospital formulary and desalted on a BioGel P2 column BioRad (Hercules, CA, USA) before use. Modified Arixtra was chemoenzymatically synthesized as previously described.27 (link) The Hp tetrasaccharide was produced from naturally occurring source as previously described.28 (link) Protein calibrants (myoglobin from equine heart, cytochrome c from equine heart, avidin from egg white, concanavalin A from Canavalia ensiformis and bovine serum albumin) were purchased from Sigma-Aldrich as lyophilized powder.
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3

Avidin-Biotin Interaction Characterization

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btCB7 (Dr. Liping Cao, Isaacs Group, Dept. of Chemistry and Biochemistry, UMD), biotin (Sigma-Aldrich), and avidin from egg white (Sigma-Aldrich, Rockland) were each received as solid powders and dissolved in phosphate-buffered saline solution before use. For avidin titration experiments, the amount of avidin was increased, while the concentration of btCB7 remained constant (50 μM). Ratios were calculated based on number of binding sites per avidin molecule and given equilibrium conditions. MALDI data was acquired from a Bruker microflex LT instrument.
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4

Chemo-enzymatic Synthesis of HS Oligosaccharides

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All chemicals and solvents (ammonium acetate, methanol, water, and formic acid) were of HPLC grade and purchased from Sigma-Aldrich, (St. Louis, MO). Protein calibrants (myoglobin from equine heart, cytochrome c from equine heart, avidin from egg white, concanavalin A from Canavalia ensiformis, and bovine serum albumin) were purchased from Sigma-Aldrich. HS hexasaccharides (dp6) to dodecasaccharides (dp12) were chemo-enzymatically synthesized as previously described [34 (link)]. HS tetrasaccharide (dp4) was chemically synthesized as previously described by fluorous supported modular synthesis [35 (link)].
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5

Streptococcus pyogenes and E. coli Detection

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Tetrachloroauric(III) acid trihydrate (HAuCl₄.3H₂O, 99.5%), trisodium citrate (C₆H₅Na₃O₇, 99.0%), avidin from egg white, and biotin-4-fluorescein were purchased from Sigma-Aldrich (Germany). Lacto-N-fucopentaose I-biotin (H-1-biotin) was purchased from Dextra Laboratories (United Kingdom). Streptococcus pyogenes M1 (ATCC® 700294), Streptococcus pyogenes M6 (ATCC® BAA-946), Streptococcus pyogenes M12 (ATCC® BAA-1315), and E. coli O157:H7 (ATCC35150) were purchased from ATCC (United States). UV–Vis absorption spectrophotometer (CE7500, United States), Transmission Electron Microscope (Zeiss EM 900, Germany), Dynamic Light Scattering (Scatteroscope I, South Korea), and fluorescence spectrometer (PerkinElmer, United States) were used.
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6

Restoring Ischemia-Impaired HUVEC Metabolism

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To
rescue ischemia-challenged HUVECs, the substrate acetyl-CoA was replenished
with acetate solution (Sigma-Aldrich Inc., MO, USA) while pyruvate
was supplemented with sodium pyruvate solution (Sigma-Aldrich Inc.),
respectively. Briefly, prior to 3 h ischemia treatment, subconfluent
HUVECs were treated with acetate solution at concentrations of 0,
5, 10, and 20 mM; sodium pyruvate solution at concentrations of 0,
2.5, 5, and 10 mM; and co-treatment with 20 mM acetate solution and
10 mM sodium pyruvate solution. To test the destiny change of ischemic
HUVECs when the TCA cycle was inhibited, the activities of citrate
synthase or pyruvate carboxylase were inhibited with palmitoyl coenzyme
A lithium salt (palmitoyl CoA, Sigma-Aldrich Inc.) or avidin from
egg white (Sigma-Aldrich Inc.), respectively. Briefly, prior to the
3 h ischemia treatment, HUVECs were treated with palmitoyl CoA at
concentrations of 0, 50, and 100 μM; with avidin at concentrations
of 0, 10, and 20 μg/mL; and with 100 μM palmitoyl CoA
and 20 μg/mL avidin.
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7

Functionalization of Magnetic Nanobeads

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Phosphate-buffered saline (PBS) powder, ethanol, 30% hydrogen peroxide, 1 N (0.5 mol/L) sulfuric acid, 3-aminopropyltriethoxysilane (APTES) 99%, trimethylamine ≥ 99% and avidin from egg white ≥ 98% were purchased from Sigma-Aldrich (Madrid, Spain). The N-Hydroxysuccinimid (NHS)-polyethylenglycol (PEG27) biotin linkers were purchased from JKU Linz [30 (link)].
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8

Electrochemical Biosensing Platform Development

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All buffer solutions were prepared with purified Milli-Q water (18.2 MΩ). Poly(allylamine hydrochloride), (PAA MW~50,000), poly(sodium 4-styrenesulfonate) (PSS, MW~70,000), tetraethyl orthosilicate (TEOS), acridine orange (AO), and avidin from egg white were purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium chloride, methylene blue (MB), 2-propanol, 25% ammonium solution, 28–30% ammonium hydroxide, acetone, and 95% ethanol were purchased from Merck (Darmstadt, Germany). DynabeadsTM MyOneTM Streptavidin T1 was purchased from Thermo Fisher Scientific (Waltham, MA, USA). AccuPower 2× Greenstar qPCR Master Mix was purchased from Bioneer (Daejeon, Korea), 2× PCR Master Mix Solution (i-StarTaq) was purchased from iNtRON Biotechnology (Seongnam, Korea).
For electrochemical measurements, screen-printed carbon electrodes (SPCE) were obtained from Quasense (Bangkok, Thailand) and the PalmSens4 potentiostat with PSTrace software version 5.8 was obtained from Palmsens (Houten, The Netherlands).
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9

Cardiac and Skeletal Troponin I Bioassay

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Human cardiac troponin I (hcTnI) was purchased from Life Diagnostics Inc. (West Chester, PA, USA), aliquoted and stored at −80 °C until being used. Human skeletal troponin I (hsTnI) was kindly provided by Dr. Tamas Mészáros from Semmelweiss University (Budapest, Hungary), aliquoted and stored at −80 °C until used. Streptavidin-Horseradish Peroxidase bioconjugate (Sigma-Aldrich, St. Louis, MO, USA) was dissolved in 10 mM of phosphate saline buffer (PBS) solution at pH 7.5 at a final concentration of 1 mg mL−1, aliquoted and stored at −20 °C until used. EZ Link sulfo-NHS-LC-LC-Biotin reagent was purchased from Pierce Biotechnology (Rockford, IL, USA). N-ethyl-N-dimethylaminopropyl-carbodiimide (EDC), N-hydroxysulfo-succinimide (NHS), bovine serum albumin (BSA), avidin from egg white, casein from bovine milk and 2-(4-Hydroxyphenylazo) benzoic acid (HABA) were purchased to Sigma-Aldrich. Methyl-(octaethyleneglycol) amine (mPEG-Amine) was acquired from Laysan Bio, Inc. (Arab, AL, USA). Other chemicals and biochemicals used were purchased to Sigma Chemical Co. (St. Louis, MO, USA) and all salts were provided by Merck (Darmstadt, Germany). SiMAG-Carboxyl magnetic beads (SiMAG-Carboxyl, 1 µm Ø, Prod. No. 1402) were purchased from Chemicell GmbH (Berlin, Germany). QdotTM 585 Streptavidin Conjugate (Qdot-SAv) was purchased from Molecular probes® (Eugine, OR, USA).
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10

Biotin-labeled Sialyl Lewis X Binding Assay

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Biotin alginate was purchased from Carbomer, Inc (San Diego, USA). Lewis B hexasaccharide-sp-biotin and Sialyl Lewis X-biotin were purchased from Carbosynth (Newbury, UK). Biotin-4-fluorescein, sodium alginate, avidin from egg white, saponin and Methylthiazolyldiphenyl-tetrazolium bromide (MTT) were purchased from Sigma-Aldrich (Munich, Germany). Clinical H. pylori strain HC 168 isolated from a PUD patient (BabA+ and SabA+) and AGS cell line were obtained from Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.24 (link),25 (link)
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