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19 protocols using metal salts

1

Potentiometric Analysis of Activated Carbon

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Analytical reagent grade chemicals and distilled, de-ionized water were used to prepare all aqueous solutions. Commercially available granular palm shell activated carbon (PSAC) was provided by Bravo Green Sdn. Bhd, Malaysia. Activated carbon powder with particle sizes <40 μm were used throughout the potentiometric experiments. PSAC was washed with distilled water to remove fines and dirt; and was dried in an oven at 110 °C for 24 h. The pH of the solutions was adjusted by adding appropriate amounts of concentrated hydrochloric acid (1 M HCl) and/or sodium hydroxide (2 M NaOH). Metal salts were purchased from Merck (Selangor, Malaysia), and aqueous metal solutions were prepared by dissolving appropriate quantities of Metal salts in de-ionized water. trioctylmethylammonium thiosalicylate (TOMATS) was purchased from Sigma-Aldrich (Kuala Lumpur, Malaysia).
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2

Assay Reagents for Enzymatic Analyses

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2,2’-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), promazine hydrochloride, syringaldazine, 1-naphthol, 2-naphthol, vanillin, galangin, kaempferol, myricetin, quercetin, fisetin, gallic, syringic, synapic, cinnamic, vanillic, chlorogenic acids, veratryl alcohol, L-3,4-dihydroxyphenylalanine (L-dopa), metal salts, and hydrogen peroxide were purchased from Sigma-Aldrich, Buchs, Switzerland. Methyl syringate purchased from Lancaster Synthesis, Ward Hill, MA, USA, was additionally recrystallized from ethanol. 2,6-dimethoxyphenol was obtained from Alfa Aesar, Kandel, Germany. Methanol, p-coumaric, o-coumaric, m-coumaric, ferulic, and caffeic acids were obtained from Fluka, Steinheim, Switzerland. N,N′-dimethylamine-4-(4-morpholine)benzene, 3-(10H-phenoxazin-10-yl)propanoic acid and 2-(10H-phenoxazin-10-yl)ethanol were prepared as described [44 (link)]. Catechol, hydroquinone, p-phenylenediamine, potassium hexacyanoferrate (II), and dyes were obtained from Reachim, Moscow, Russia. Molecular biology enzymes and kits were purchased from Thermo Fisher Scientific, Vilnius, Lithuania.
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3

Ribo-2AP-modified substrate characterization

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The ribo-2AP-modified substrate was from Trilink BioTechnologies (San Diego, CA, USA). The rest of the DNA samples were purchased from Integrated DNA Technologies (Coralville, IA, USA), and their sequences and modifications are shown in Supplementary Table S1. The metal salts were from Sigma-Aldrich, and buffers were from Mandel Scientific Inc. (Guelph, Ontario, Canada). Milli-Q water was used to prepare all the buffers and solutions.
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4

Thermal Denaturation Assay of Cgr2

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Thermal denaturation assays of purified and reconstituted Cgr2 were prepared on ice in 0.2 mL skirted 96-well PCR plates (VWR, Radnor, PA) sealed with optical adhesive covers (Life Technologies, Woburn, MA). Each reaction contained 10 µg of purified or reconstituted Cgr2, Sypro Orange protein gel stain (Thermo Fisher Scientific, Waltham, MA) diluted 5000-fold, and buffer containing 100 mM buffering agent and 100 mM NaCl in a total volume of 30 µL. The following buffering agents were used: acetate/acetic acid for pH 4–6, HEPES for pH 7, Tris-HCl for pH 8–9, and glycine-NaOH for pH 10. For metal binding assays, metal salts (Sigma-Aldrich, St. Louis, MO) were dissolved in pH 8 buffer to generate 100 mM stock solutions and added to a final concentration of 48 µM (8 equivalents relative to Cgr2). Data was collected on a CFX96 Touch Real-Time PCR machine (Bio-Rad, Hercules, CA) using the ‘FRET’ filter setting with FAM excitation and HEX emission channels (485 nm and 556 nm respectively). The following temperature-scan protocol was used: 25°C for 30 s, then ramp from 25°C to 100°C at a rate of 0.1 °C/ s.
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5

Antimicrobial Susceptibility Testing

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Media, sodium chloride, metal salts, H2SO4, HCl and NaCl were obtained from Sigma Chemicals Co. (St. Louis, MO, USA). Antibiotic discs were from (Oxoid, Limited, Basingstoke, Hampshire, England).
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6

Synthesis and Characterization of Chemosensor Ligand

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2-Hydroxy-5-methylbenzene-1, 3-dialdehyde, and 2-aminothiophenol were used as starting materials in the synthesis of the ligand. The solvents used in this project, which include ethanol, acetonitrile, and N,N dimethylformamide, are of high purity and manufactured by Merck. Metal salts were also obtained from Sigma-Aldrich. The available IR spectrum was taken by a Jasco FT/IR-4200 instrument. NMR spectra were taken by a Bruker NMR spectrometer (400 MH). All frequencies are in units of 1 cm wave number. UV–Vis spectra were recorded using a Varian Eclipse 300 spectrophotometer. A quartz cell with a path length of 10 mm was used in all experiments.
The Mass spectrometry experiments were performed on a Thermo LXQ ESI-MS with an ion trap mass separator. A solution of synthesized ligand (NC) was made at 1 mg mL−1 in LC/MS grade CH3CN. After a blank was recorded, the solution containing a ligand was injected into the instrument, and the mass spectra were recorded. The Mass spectrum of the chemosensor was reported in positive ion mode.
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7

Synthesis of Novel Heterocyclic Compounds

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The starting chemicals were metal salts, ammonium acetate, hydrazine hydrate, acetyl thiophene, 4-methoxy benzaldehyde, ethyl cyanoacetate, ethyl chloroacetate, and potassium carbonate that were purchased from Sigma Aldrich and utilized without additional purification. Fisher Scientific (Loughborough, UK) supplied the solvents, which were ethanol (99%) and N,N-Dimethylformamide (99%).
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8

Deposition of Metal Salts on DNA Superlattices

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Metal salts were purchased from Sigma-Aldrich and Alfa Aesar. All chemicals were diluted to 20 mM in either water or EtOH. Approximately 20 μl was dropped onto the surface of silicon substrate with silica-coated DNA superlattice spread on the surface for 5 min. The samples were then spun at 3000 rpm for 30 s, followed by thermal annealing in air at 250°C or RTP at 600°C in oxygen. For combinations, equal volumes were mixed and drop-cast onto the superlattices. The following chemicals were attempted, and supplemental figures will indicate the specific metal salt for duplicate chemistries: platinum (Na2PtCl4 in water), gold (NaAuCl4 in water or EtOH), tin (H4SnCl6 in EtOH), copper (NH4CuCl4 in EtOH), molybdenum [(NH4)6Mo7O24 in water], tungsten [(NH4)6H2W12O40 in water], and indium (InCl3 in EtOH).
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9

Synthesis and Characterization of Nanomaterials

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All the reagents
were of analytical reagent grade and Milli-Q water was used throughout
the experiment. All metal salts, iron dust, and all iron oxides were
purchased from Sigma-Aldrich. Sodium borohydride, hydrazine, and lithium
aluminum hydroxide were obtained from Alfa Aesar. Hydrochloric acid,
different organic solvents, sodium hydroxide, and BG were purchased
from Fisher Scientific. All glassware were cleaned with freshly prepared
aqua regia, subsequently rinsed with copious amounts of distilled
water, and were dried well before use. All the reagents were used
without further purification.
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10

Preparing Metal(loid) Stock Solutions

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Metal salts were obtained from Sigma Chemical Company (St. Louis, U.S.A.) for the various metal(loids): selenite (Na2SeO3), tellurite (Na2TeO3), vanadate (NaVO3), chromate (Na2CrO4), arsenite (NaAsO2), cadmium (CdCl2), and mercury (HgCl2) were diluted in sterile water at twice the highest concentration to be tested (Turner et al., 2001 (link)). Metal solutions were passed through a 0.22 μm syringe into sterile vials and stored at room temperature.
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