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Superdex 200 hr

Manufactured by GE Healthcare
Sourced in United Kingdom

Superdex 200 HR is a size-exclusion chromatography media designed for high-resolution separation of proteins, peptides, and other biomolecules. It is composed of highly cross-linked agarose beads with a fractionation range of 10,000 to 600,000 daltons. The media provides high mechanical stability and enables efficient separations at high flow rates.

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13 protocols using superdex 200 hr

1

Humanized Antibody Production and Characterization

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The stable expression of the humanized antibody was obtained as described previously [57 (link)]. Briefly, YB2/0 cells (ATCC CRL1662) were stably transfected with the linearized expression vectors. The hu8ELC18 antibody was produced in YB2/0 over 5–7 days using EMS (Invitrogen, Villebon Sur Yvette, France), 5% ultra low IgG FCS (PAA) and 0.5 g/L G418. The monoclonal hu8ELC18 was purified from culture supernatant by affinity chromatography onto protein A sepharose (GE-Healthcare, Vélizy-Villacoublay, France, 28-9365-47). The level of aggregates and endotoxins were determined by gel filtration on Superdex HR/200 (GE-Healthcare, 17-5175-01) and by LAL (limulous amoebocyte lysate) testing [58 (link)], respectively, and were always below 2%. Antibody quality and purity was also controlled by SDS-PAGE and Coomassie staining. In addition, glycosylation patterns and the core fucose percentage were determined for each purified antibody by high performance capillary electrophoresis laser induced fluorescence (HPCE-Lif) [59 (link),60 (link)] confirming the characteristic with EMABling platform (LFB, Alès, France).
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2

Humanized Antibody Expression and Characterization

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The stable expression of the humanized antibody was obtained as previously described [47 (link)]. Briefly, YB2/0 were stably transfected with the linearized expression vectors. The humanized IgGs were produced in YB2/0 over 5 to 7 days using EMS (Invitrogen, Carlsbad, USA), 5% Ultra low IgG FCS (PAA) and 0.5 g/L G418. The antibodies were purified from culture supernatant by affinity chromatography onto protein A sepharose (GE-Healthcare, Chalfont St Giles, UK). The level of aggregates and endotoxins were determined by gel filtration on Superdex HR/200 (GE-Healthcare, Chalfont St Giles, UK) and by LAL (limulous amoebocyte lysate) testing [48 (link)], respectively. Antibody quality and purity was also monitored by SDS-PAGE and Coomassie staining. In addition, glycosylation patterns and the core fucose percentage were determined for each purified antibody by high performance capillary electrophoresis laser induced fluorescence (HPCE-Lif) [49 (link),50 (link)] confirming the EMABling characteristic.
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3

Recombinant TTR Protein Expression and Amyloid Formation

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Recombinant wild type and mutant forms of TTR were expressed and purified from an Escherichia coli cells transformed from the pMMHa plasmid as described previously.34 (link) Briefly, overexpressed proteins in the soluble fraction of the sonicated lysates were extracted using ammonium sulfate precipitation methods. The precipitates were resuspended with deionized water and purified using anion exchange Q column, followed by size exclusion gel-filtration chromatography using Superdex HR 200 column (GE Health care). The expression and purification methods yielded a large quantity of TTR proteins (~ 80 mg from a 1L M9 medium culture). The protein concentration was calculated using an extinction coefficient of 7.76 × 104 M−1 cm−1 at 280 nm.
Amyloid samples were obtained by incubating the protein (0.2 mg/mL) in 200 mM acetate buffer (100 mM KCl, 1 mM EDTA, pH 4.4) for a period of 30 days at 37 °C. The insoluble amyloid was spun down and washed twice with deionized water to remove remaining tetramers and soluble aggregates. The TTR amyloid was examined by transmission electron microscopy (TEM) and thioflavin T (ThT) binding assay in our previous studies.33 (link)
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4

Stable Expression and Characterization of Therapeutic Antibodies

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The different molecules were stably expressed, as previously described [30 ]. CHO-S, HEK293 or YB2/0 cells were stably transfected with the appropriate linearized expression vectors. Ch12G4, h12G4 and 3C23K antibodies were produced in YB2/0 cell using EMS (Invitrogen), 5% Ultra-low IgG fetal calf serum (FCS) (PAA) and 0.5g/l G418 for 5 to 7 days. 3C23K-CHO-S was produced in CHO-S cells using ProCHO4 (Lonza), 4mM glutamine and 1g/l G418 for 7 days.
MAbs were purified from culture supernatants by affinity chromatography using protein A sepharose (GE-Healthcare). The levels of aggregates and endotoxins were determined by gel filtration on Superdex HR/200 (GE-Healthcare) and by LAL testing, respectively. Antibody quality and purity were monitored by SDS-PAGE and Coomassie staining. In addition, the glycosylation patterns and core fucose percentage of each purified antibody were determined by high performance capillary electrophoresis laser induced fluorescence (HPCE-Lif) [55 (link)].
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5

Purification of His-tagged MmGADL1 Protein

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His6-tagged MmGADL1 was expressed in Escherichia coli BL21-CodonPlus(DE3)-RIPL cells (Stratagene) at 288 K using 150 mM IPTG induction. Cell pellets were lysed by sonication in a buffer consisting of 50 mM sodium phosphate buffer pH 7.4, 500 mM NaCl, 20 mM imidazole, 0.2 mg ml−1 lysozyme, 1 mM MgCl2, 2 mM pyridoxine hydrochloride and cOmplete EDTA-free protease inhibitors (Roche). Phenylmethyl­sulfonyl fluoride was added to 1 mM immediately following sonication. The unclarified lysate was applied directly onto an IMAC HiTrap TALON crude column (GE Healthcare). The column was washed with 50 mM sodium phosphate pH 7.4, 500 mM NaCl, 50 mM sodium phosphate pH 7.4, 500 mM NaCl, 20 mM imidazole. Elution was carried out with 100 mM imidazole in 50 mM sodium phosphate pH 7.4, 500 mM NaCl. Size-exclusion chromatography was performed using a Superdex HR 200 column (GE Healthcare) equilibrated with 20 mM HEPES, 200 mM NaCl pH 7.5.
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6

Purification of AwF-ATP Synthase Complex

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Cloning, expression and affinity purification of the AwF-ATP synthase was performed as previously described [5] . E. coli DK8 cells containing the plasmid encoding the enzyme was cultivated in 2xYT-medium at 37 °C under aeration. To solubilize the AwF-ATP synthase, the membrane pellet, which was prepared by ultracentrifugation (180,000xg, 45 min), was dissolved in 50 mM Tris/HCl, 10 mM MgCl 2 , 10% [v/v] glycerol, pH 7.5) containing 1% [w/v] n-dodecyl--maltoside (DDM; Thermo Scientific, UAS). The AwF-ATP synthase was further purified using Ni 2+ -NTA-chromatography and Superdex HR 200 (GE Healthcare) column. The purity of the enzyme complex was assessed by SDS-PAGE and MALDI-MS [5] .
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7

Structural Characterization of sCR3 Conformers

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CHO-sCR3 cells were cultured in F12 medium supplemented with 10% FCS at 37°C and culture supernatants were harvested every week. sCR3 was purified from the filtered culture supernatant by using an immunoaffinity chromatography matrix prepared by a covalent linkage of MEM-174 mAb to Cyanogen bromide (CNBr)-activated Sepharose 4B beads (GE Healthcare, Piscataway, NJ). The bent and extended conformers of the sCR3 ectodomain were separated by gel filtration chromatography on Superdex 200 HR (GE Healthcare, Piscataway, NJ) in HBSS buffer complemented with 2 mM CaCl2 and 2 mM MgCl2. The freshly separated conformers of sCR3 were directly applied on glow-discharged carbon copper grids (Benada and Pokorny, 1990 (link)), stained with 0.75% uranyl formate, and visualized in a Philips CM 100 transmission electron microscope (FEI, Eidhoven, Netherlands) equipped with a MegaViewII slow scan camera controlled by AnalySis 3.2 software (Olympus Soft Imaging Solutions, Münster, Germany).
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8

IgM and IgY Purification Protocol

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The final pellet resulting from the PEG precipitation was solubilized in Tris-buffered saline (TBS, 50 mM Tris, 150 mM NaCl, pH 8.0), loaded onto a Superdex 200 HR (GE Healthcare Lifesciences) 10/30 column (V = 24 ml), equilibrated into PBS (pH 7.4), and the proteins were separated at a flow rate of 0.4 ml/min. The fractions containing IgM and IgY were pooled and further purified with a Sephacryl S-200 HR 16/60 column (V = 120 ml) at a flow rate of 1 ml/min using PBS as the eluent. The collected fractions were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and the fractions containing the purified protein were pooled and concentrated using a 30 kDa cut off centrifugal filter device (Millipore).
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9

Recombinant Expression of HLA-DR4

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A codon-optimized gene encoding the extracellular region of the HLA-DR4 α chain (residues 1–182) was synthesized (GenScript) and cloned into the mammalian expression vector pcDNA3.4-TOPO with a C-terminal Fos leucine zipper (GGGGGLTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA) and His6 tag. A codon-optimized gene encoding the extracellular region of the HLA-DR4 β chain (residues 1–190) was cloned into pcDNA3.4-TOPO with a C-terminal Jun leucine zipper (GGGGRIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH) and an N-terminal sequence comprising MBP 114–126 (FSWGAEGQRPGFG) followed by a 16-mer peptide linker (SGGGSLVPRGSGGGGS). The HLA-DR4 α and β chain constructs were mixed in a 1:1 molar ratio and transfected into Expi293F cells at 2.5 × 106 cells/ml using an ExpiFectamine 293 Transfection Kit (ThermoFisher). The culture was harvested after 96 h and MBP–HLA-DR4 purified from the supernatant using sequential Ni2+-NTA and Superdex 200HR columns (GE Healthcare).
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10

Protein Refolding via Gel Filtration

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Gel filtration chromatography was performed on a Superdex 200HR gel filtration column (GE Healthcare, UK) connected to AKTAprime Plus liquid chromatography system (GE Healthcare, UK). The column was equilibrated with a buffer containing 20 mM Tris–HCl (pH 8.0), 150 mM NaCl and 2 mM CaCl2 before the denatured proteins (400 µg) in 50 mM Tris–HCl (pH 8.0) and 8 M urea were loaded onto the column and refolded at a flow rate of 0.5 ml/min.
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