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6 protocols using chemstation rev b04

1

Optimized GC-MS Protocol for Chlorpyrifos

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The conditions for the analysis were: detector temperature, 280°C; injector temperature 270°C; oven temperature program starting at 120°C, 3.67 min at 120–230°C (ramp 30°C min−1), 5 min at 230°C, 2 min at 230–270°C (ramp 20°C min−1), 2 min at 270°C; carrier gas, N2 at 1 mL/min; injection volume 1.0 µL, in a splitless mode. A linear calibration curve was used and the calibration range was 0.01–5 mg kg−1. Under these conditions chlorpyrifos retention times were approximately 7.52 min. The software was Agilent ChemStation Rev. B04.03 software for instrument control, data acquisition and processing.
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2

Fatty Acid Composition Analysis Using GC

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The fatty acids composition was determined according to [44 (link)] using an Agilent Technologies 7683B Series gas chromatograph (USA) with a flame ionization detector and a 100 m Agilent J&W GC Columns Select FAME, 25 mm × 0.25 µm column (Netherlands). Oil samples (10–15 mg) were placed in a 5 mL tube, and then 2 mL of methanol, 20 µL of chloroform, and 2 µL of acetyl chloride were added. The tube was sealed tightly with a lid and spacer and placed in a thermostat (Binder FED 53, Germany) at 80 °C for 1 h. After cooling (about 10 min), 2.5 mL of hexane and 70 µL of distilled water were added to the samples. The samples were covered again and stirred on a vortex for about 30 s. The samples were allowed to stand for about 5 min, and then 1 mL of the upper phase was transferred to the vial for analysis. The sample introduction volume was 1 µL, the mode was 30:1 flow division, the carrier gas was nitrogen, and the flow rate was 0.9 mL/min. The injector temperature was 260 °C and the detector temperature was 240 °C. Separation conditions: initial temperature of 140 °C (isotherm for 5 min) and then increasing at a rate of 4 °C/min to 220 °C, isotherm 25 min. Data were collected and processed using Agilent ChemStation Rev.B.04.03 software. Ratios of LC methyl esters were calculated using the internal normalization method.
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3

Dual-Column GC-FID Analysis of Volatile Compounds

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The chromatographic system used was an HS-GC/FID Agilent 7890A equipped with a FID and coupled to an Agilent 7697A HS sampler. A dual-column confirmation, which involves injecting a single sample and running it through two chromatographic columns, was performed. The two columns had different polarities and consisted of an Agilent DB-ALC1 column with dimensions of 30 m × 0.32 mm, 1.8 μm and an Agilent DB-ALC2 column with dimensions of 30 m × 0.32 mm, 1.2 μm.
The chromatographic gradient was programmed as follows: an initial oven temperature of 40 °C was held for 3 min and then increased in a linear fashion to 150 °C at 10 °C/min and held for 15 min. At the end of each run, the initial temperature was reset to the initial condition and held for 2 min. The injection port was maintained at 150 °C and had a split ratio of 10:1. The detectors were held at 300 °C. The gas flow rates were as follows: hydrogen 30.0 mL/min, air 400.0 mL/min and nitrogen 25.0 mL/min. The nitrogen flow rate was maintained at a constant 17 psi.
The HS injection port was maintained at 65 °C, the loop was maintained at 105 °C and the transfer line was maintained at 110 °C. Before injection of the sample, the vials were incubated for 10 min at 65 °C. The injection time was held constant at 1 min. The GC run time was 24 min. The analytical data were processed using the Agilent ChemStation Rev. B.04.03 software.
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4

Cholesterol Analysis by HPLC

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Samples for the HPLC analyses were prepared as follows. Aliquots of culture liquid were 20–25 times diluted by acetonitrile-isopropanol solution (50:45, v/v). Suspension was centrifuged at 12,100× g for 10 min. Aliquots of the supernatant were used for the analyses. The analyses were performed on the Agilent 1200 instrument (Agilent Technologies, Waldbronn, Germany), column Symmetry C18 (5 µm, 4.6 × 250 mm) with precolumn Symmetry C18 (5 µm, 3.9 × 20 mm) (Waters, Milford, MA, USA). The calibrations were done by an external standard method based on the comparison of peak areas. Processing of results was carried out using ChemStation Rev. B. 04.03 (Agilent Technologies, Santa Clara, CA, USA).
The following conditions were used: flow rate of 1 mL/min, column temperature 50 °C, detection of 3β-ol-5-en/3-keto-4-en configurations at 200/240 nm, respectively, mobile phase for cholesterol and its derivatives: acetonitrile:isopropanol:water (50:45:5 v/v/v) or acetonitrile:water:acetic acid (60:40:0.01 v/v/v).
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5

Quantification of Metabolites in Oilseed Rape

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Metabolite analysis was performed on a Waters Acquity ultraperformance liquid chromatography machine with diode array detection (UPLC-DAD) using methods and software described in the Waters Corporation user manual. The manual was adapted for oilseed rape tissue by [34 (link), 35 (link)]. The AccQtag method was used to quantify amino acids and the integration software Empower (Waters Corporation, Milford, USA) was used for analysis. Samples were resuspended in 100 mL distilled water. Subsequently, 5 mL were derivatized using AccQTag Ultra Derivatization Kit, according to the manufacturer’s recommendations. An external standard of 100 mmol/L of each amino acid was run every 10 samples. Quantification of sugars was performed using a gas chromatography-flame ionization detector (GC-FID) System from Agilent Technologies (Santa Clara, CA, USA) according to [36 (link)]. The integrated Agilent software ChemStation Rev.B.04.02 was used for data analysis. Samples were resuspended in 50 mL pyridine (100%) with methoxamine hydrochloride (240 mmol/L), then derivatized with 50 mL MSTFA (N-methyl-N-(trimethylsilyl)trifluoro acetamide) (100%). An external standard containing 400 mmol/L of each sugar, sugar alcohol and organic acid was run every 10 samples.
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6

Capillary Electrophoresis for Biomolecule Analysis

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For all experiments, an Agilent 7100 CE System (Waldbronn, Germany) coupled with UV-Vis absorbance diode-array detector and equipped with automatic injector was used. The bare fused silica capillary (Polymicro Technologies, Phoenix, AZ, USA) with a total length of 40 cm (effective length of 31.5 cm) and an inner diameter of 75 µm was used as the separation column. To measure migration times, peak heights, peak areas, and other data Agilent ChemStation Rev. B.04.02. SP1 software were used. The Millipore Milli-Q-RG System (Waterford, Ireland) was used for the deionization of water. A pH meter (Mettler-Toledo, Columbus, Ohio, USA) was used to adjust the pH of the buffer solutions and to shake the samples vortex. The Labconco CentriVap (Kansas City, MO, USA) was used to lyophilize samples, and a centrifuge with a fast cool function (Mikro 220R, Hettich Zentrifugen, Tuttlingen, Germany) was used to centrifuge the samples. Fourier-transform infrared spectroscopy (FTIR) analysis was performed on a Nicolet iS50FT-IR spectrometer (Thermo Scientific, Madison, WI, USA) with a DTGS detector and the EasyDiff (PIKE Technologies, Fitchburg, WI, USA) diffuse reflectance accessory over the spectral region from 4000 to 400 cm−1, using 64 sample scans and a resolution of 4 cm−1.
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