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6 protocols using anti nestin

1

Immunohistochemical Analysis of Stem Cell Markers

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Primary antibodies including goat anti-LRP6 (Abcam, Cambridge, MA, USA), anti-nestin (Aves Labs, Tigard, OR, USA), rabbit anti-osterix (Abcam, Cambridge, MA, USA), rabbit anti-osteocalcin (Takara, Otsu, Shiga, Japan) and anti-5-bromo-2′-deoxyuridine (BrdU) (Abcam, Cambridge, MA, USA) were used for immunohistochemical analysis. Secondary antibodies for immunohistochemistry were from Jackson ImmunoResearch (West Grove, PA, USA).
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2

Immunofluorescence Analysis of Neural Stem Cells

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Brains were cut into 10‐µm‐thick cryosections. For immunofluorescence analyses, brain slices were washed three times in PBS (10 min each time). To detect BrdU incorporation, fixed brain slices were pre‐treated with 1 M HCl for 30 min at 37°C. The slices were then washed with 0.1 M borate buffer (pH 8.5) for 30 min (15 min each time) and with PBS for 30 min (10 min each time). Slices were fixed in 4% paraformaldehyde for 15 min at room temperature and washed three times in PBS (10 min each time). Next, the slices were blocked in a blocking solution (2% bovine serum albumin, 0.3% Triton X‐100 and 0.1% sodium azide) at room temperature for 2 h. The slices were then incubated with the primary antibodies (anti‐ARID1A, Sigma, HPA005456; anti‐Nestin, Aves Labs, NES; anti‐Tuj1, Biolegend, 801202; anti‐PAX6, Biolegend, 901301; anti‐BrdU, abcam, ab6326‐125; anti‐PHH3, Millipore, 09‐797; anti‐Ki67, Labvision, RM‐9106‐S1) diluted in the blocking solution at 4°C overnight and labelled using the appropriate secondary antibodies (Goat anti‐mouse 488, A11001; Goat anti‐rabbit 488, A11034; Goat anti‐rabbit 568, A11011; Goat anti‐rat 568, A11077; Goat anti‐chicken 488, A11039; Donkey anti‐goat 568, A11057) at room temperature for 2 h.
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3

Comprehensive Antibody and Drug Panel for Neurobiological Research

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The following primary antibodies were used: Anti-MeCP2 (Cell Signaling, 3456, 1:2,000), Anti-MeCP2 (Abcam, ab50005, 1:2,000), Anti phospho-S421 (custom made by Covance, 1:2,000), anti-β-Actin (Sigma-Aldrich, a5441, 1:5,000), anti-AURKB (Millipore, 04-1036, 1:1,000; Cell Signalling, 3094, 1:1,000), anti-DLL1(Abcam, Ab84620, 1:1,000), anti-NICD(Cell Signaling, 4147, 1:1,000), anti-phospho-Histone H3 (Ser10)(Cell Signalling, 3377, 1:1,000), anit-Histone H3 (Active Motif, 39163, 1:10,000), anti-S100b (SWANT, 1:500), anti-NeuN (Millipore, MAB377, 1:1,000), anti-BrdU (Accurate Chemical & Scientific, H7786, 1:1,000), anti-Ki67 (Dako, M7248, 1:500), anti-Tuj1 (Progema, G7121, 1:1,000), anti-MAP2(Abcam, ab32454, 1:1,000), anti-GFAP (Dako, Z0334, 1:1,000), anti-Nestin (Aves labs, NES, 1:500), anti-SOX2 (Millipore, MAB4343, 1:1,000), anti-MCM2 (Santa Cruz, sc-9839, 1:1,000). DyLight 680/800 conjugated secondary antibodies (Thermo Fisher Scientific) were used for Western blot. Alexa Fluor conjugated secondary antibodies (Invitrogen) were used for immunofluorescence staining. The following drugs were used: DAPT(Sigma-Aldrich), nocodazole (Sigma-Aldrich), colchicine (Sigma-Aldrich), roscovitine (Calbiochem), nimodipine (Sigma-Aldrich), Myr-CaMK IINtide (Calbiochem), STO-609 (Tocris), Bay K8644 (Calbiochem), Hesperadin (Selleckchem)
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4

Multiplex Immunofluorescence Staining

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Double immunofluorescence staining was performed as described previously64 65 (link). After blocking in 0.5% horse serum, sections were incubated with first antibodies anti-GFP (Rockland, 600-101-215,1:500, or Abcam, ab290,1:200), anti-Nestin (Aves Labs, NES, 1:100), anti-active RhoA-GTP (NewEast Bioscience, 26904, 1:100), anti-MMP3 (Abcam, ab52915, 1:100), anti-CD31 (Abcam, ab28364, 1:50), anti-αSMA (Abcam, ab5694, 1:200), anti-CD11b (Abcam, ab8878, 1:200), anti-VE-cadherin (Abcam, ab33168, 1:100), anti-Leptin Receptor (R&D, BAF497, 1:200), anti-fibronectin (Abcam, ab2413, 1:200), anti-collagen I (Abcam, ab21286, 1:200), anti-phospho-VEGFR2 (Tyr1175) (Abcam, ab38464, 1:100), followed by incubation with FITC or Cy3-conjugated secondary antibodies (Jackson ImmunoResearch). Nuclei were counterstained with 4,6-diamidino-2-phenylindole (Sigma). The sections were mounted with the ProLong Antifade Kit (Molecular Probes) and observed under a confocal microscope (FLUOVIEW FV300, Olympus).
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5

Tracing Forebrain Neural Progenitors

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Serial coronal brain sections (40 μm in thickness) through the entire forebrain were cut by a cryostat or a sliding microtome and were immunostained with the following antibodies: anti-GFP (1:200 or 500; goat; Rockland), anti-GFP (1:500; chicken; Aves Labs), anti-RFP (1:200 or 1,000; rabbit; Rockland; to detect tdTomato), anti-Nestin (1:500; chicken; Aves Labs), anti-goat/chicken Cy2, anti-rabbit Cy3, and anti-goat Cy5 (1:200 or 500; donkey; Jackson ImmunoResearch). EdU was visualized on cryosections in the detection solution (5 uM Sulfo-Cy3 azide [Lumiprobe], 0.1 M Tris pH 7.5, 4 mM copper sulfate, 100 mM sodium ascorbate) for 30 min after permeabilization in 0.5% Triton-X100 for 30 min. Consecutive sections covering individual clones were imaged using Zeiss LSM 710 confocal microscope (Carl Zeiss). For 3D reconstruction, optical stacks from the entire diencephalon were serially aligned along the rostro-caudal axis using Reconstruct 1.1.0 (J.C. Fiala, NIH), followed by import into Imaris (Bitplane) for further analysis.
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6

Comprehensive Antibody and Drug Panel for Neurobiological Research

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The following primary antibodies were used: Anti-MeCP2 (Cell Signaling, 3456, 1:2,000), Anti-MeCP2 (Abcam, ab50005, 1:2,000), Anti phospho-S421 (custom made by Covance, 1:2,000), anti-β-Actin (Sigma-Aldrich, a5441, 1:5,000), anti-AURKB (Millipore, 04-1036, 1:1,000; Cell Signalling, 3094, 1:1,000), anti-DLL1(Abcam, Ab84620, 1:1,000), anti-NICD(Cell Signaling, 4147, 1:1,000), anti-phospho-Histone H3 (Ser10)(Cell Signalling, 3377, 1:1,000), anit-Histone H3 (Active Motif, 39163, 1:10,000), anti-S100b (SWANT, 1:500), anti-NeuN (Millipore, MAB377, 1:1,000), anti-BrdU (Accurate Chemical & Scientific, H7786, 1:1,000), anti-Ki67 (Dako, M7248, 1:500), anti-Tuj1 (Progema, G7121, 1:1,000), anti-MAP2(Abcam, ab32454, 1:1,000), anti-GFAP (Dako, Z0334, 1:1,000), anti-Nestin (Aves labs, NES, 1:500), anti-SOX2 (Millipore, MAB4343, 1:1,000), anti-MCM2 (Santa Cruz, sc-9839, 1:1,000). DyLight 680/800 conjugated secondary antibodies (Thermo Fisher Scientific) were used for Western blot. Alexa Fluor conjugated secondary antibodies (Invitrogen) were used for immunofluorescence staining. The following drugs were used: DAPT(Sigma-Aldrich), nocodazole (Sigma-Aldrich), colchicine (Sigma-Aldrich), roscovitine (Calbiochem), nimodipine (Sigma-Aldrich), Myr-CaMK IINtide (Calbiochem), STO-609 (Tocris), Bay K8644 (Calbiochem), Hesperadin (Selleckchem)
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