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6 protocols using d4522

1

Quantifying Serum DNase I Levels

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The concentration of serum DNase I was measured using a commercial ELISA kit according to the manufacturer’s instructions (EIAab, Catalog No: E1127h, Wuhan, China). The optical absorbance was measured at 450 nm in an ELISA reader (Bio-Rad 550; Bio-Rad Laboratories, Tokyo, Japan). Samples were compared to the standard curve and the results were expressed in ng/mL.
Among the above-mentioned patients, we recruited 22 patients in active stage with sufficient serum samples, and randomly selected 30 patients in remission, to detect the DNase I activity. DNase I activity was measured using radial enzyme-diffusion method, as previously described [24 (link)]. To 12ml of 10mM Tris/Ca/Mg buffer, 1.2ml of DNA from calf thymus (D4522, sigma) at 5mg/ml, 3μl ethidium bromide (EB) and 13.2ml melted 2% agarose (Biowest), were added. Then the substrate was poured onto the gel plate. Wells were cut of 1mm diameter, filled with 2μl standards and serum sample, then the plate was incubated at 37°C overnight. The plate was photographed on a UV Transilluminator. The area of dark circles of hydrolysed DNA was scanned by Image-Pro Plus 6.0.
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2

Screening Bacterial-Specific IgA Antibodies

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For the screen of monoclonal IgA antibodies against bacterial antigens, reciprocal dilutions of hybridoma-produced IgA antibodies were added to ELISA plates, which were pre-coated with whole bacteria of the 8M community, respectively, and blocked with 1% BSA. The captured IgA was detected by horseradish peroxidase (HRP)-conjugated goat anti-mouse IgA antibody (Sigma-Aldrich; A4789). ELISA plates were then developed by TMB microwell peroxidase substrate (KPL, Inc.; 50–76-03), quenched by 1 M H2SO4, and read using a BioTek Synergy HTX plate reader. The polyreactivity of hybridoma-produced IgA was tested by adding antibody to ELISA plates that were pre-coated with individual common antigen including lipopolysaccharide (Sigma-Aldrich; L4391), double stranded DNA (Sigma-Aldrich; D4522), insulin (Sigma-Aldrich; 91077C), flagellin (Sigma-Aldrich; SRP8029) and albumin (Sigma-Aldrich; A1653). ELISA plates were then washed, developed and read as described above.
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3

PARP-1 Inhibition Assay Protocol

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Inhibition of PARP-1 activity was evaluated in a radioisotope-based filter binding assay by Reaction Biology Corporation (Malvern PA) using human recombinant PARP-1 (residues 1-1014, Genbank accession # NM_001618.3, MW = 114.8 kDa) expressed with a C-terminal His-tag in Sf9 insect cells, >80% pure by SDS-PAGE. Polymerization of 32P-NAD+ (10 µM) on core histones (0.01 mg/mL) in buffer (50 mM Tris-HCl, 50 mM NaCl, 10 mM MgCl2, 0.02% Brij35, 1 mM DTT, 1% DMSO and 20 µg/mL activated DNA (Sigma-Aldrich D4522) was measured after 1 h incubation and washout of remaining free NAD+. Each compound was included in a 10-point, 3-fold dilution dose response experiment and an IC50 value derived.
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4

Quantifying Anti-dsDNA Antibodies in Mice

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The level of total anti-dsDNA in serum was determined with a sandwich ELISA. Costar assay plate (96-well, flat bottom, High binding. Corning incorporated, Ref: 3369) were U–V treated and coated with poly dA-dT (Sigma D4522, Lot: SLCD4909, 7.5 μg/ml) and HRP-conjugated goat anti-mouse IgG Fc (dilution 1:10000, Cat: 115035008, Jackson immune research) was used as the detection Ab; TMB (3,3′,5,5′-tetramethylbenzidine) was used as substrate (Sigma). Plates were washed with an automated plate washer (BioTek ELx405Select CW, Winooski, VT) and read the absorbance at OD450 with an ELISA plate reader (BioTek EL808). Sera were diluted 1:100 with 10% FBS in PBS. Data were obtained from four independent experiments with 6 pairs of mice in each experiment. In each experiment, equal number (3 males and 3 females from each group) of male and female mice were used.
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5

PARP1 and TKT activity assay

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The reactions were performed with recombinant PARP1 and TKT at 30 °C for 1 h in a reaction buffer (50 mM Tris-HCl, pH 7.5, 20 mM NaCl, 4 mM MgCl2 and 250 μM DTT) supplemented with 1 mM NAD+ and 100 ng activated DNA (Sigma-Aldrich, D4522). Reactions were stopped by adding SDS sample loading buffer and the samples were analyzed by Western blotting.
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6

Anti-dsDNA Antibody ELISA Protocol

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The level of total anti-dsDNA in serum was determined with a sandwich ELISA.
Costar assay plate (96-well, flat bottom, High binding. Corning incorporated, Ref: 3369) were U-V treated and coated with poly dA-dT (Sigma D4522, Lot: SLCD4909, 7.5 µg/ml) and HRP-conjugated goat anti-mouse IgG Fc (dilution 1:10000, Cat: 115035008, Jackson immune research) was used as the detection Ab; TMB (3,3′,5,5′-tetramethylbenzidine) was used as substrate (Sigma). Plates were washed with an automated plate washer (BioTek ELx405Select CW, Winooski, VT) and read the absorbance at OD 450 with an ELISA plate reader (BioTek EL808). Sera were diluted 1:100 with 10% FBS in PBS.
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