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2 protocols using protein a donor beads

1

Comprehensive Ubiquitin Assay Protocol

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Hypoxanthine, sorbitol, percoll, MG132, Epoxomicin, Lactacystin, Clasto-Lactacystin β-lactone, Gliotoxin, MG115, EDTA, sodium phosphate dibasic, monosodium phosphate, Tris HCl, sodium chloride, Tween-20, sodium pyrophosphate, glycerol-2-phosphate, saponin, bovine serum albumin (BSA), dithiothreitol (DTT) and phenylmethylsulphonyl fluoride (PMSF) were purchased from Sigma. Glutathione acceptor beads, protein A donor beads, DELFIA enhancement solution and DELFIA secondary antibody (Eu-N1 rabbit Anti-mouse-IgG) came from Perkin Elmer. NP-40 was purchased from Calbiochem, sodium fluoride from Panreac, antibody anti-ubiquitin P4D1 from Santacruz, deubiquitylases inhibitor PR-619 came from Merck, complete mini EDTA protease inhibitor cocktail from Roche, antibody anti-ubiquitin FK2 from Enzo, biotin-TUBEs from Life sensor, RPMI 1640 medium from Gibco, AlbuMAX II from Invitrogen, bortezomib from Selleckchem, enhanced chemiluminescence (ECL) from GE Healthcare and PBS from Oxoid. Atovaquone was prepared in house.
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2

Gamma-Secretase Activity Assay

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Notch1 substrate (N1-Sb1) (0.4 μM) was incubated with cell membrane from the cell pellet (40 μg/mL) in the presence of 0.25% CHAPSO and PIPES buffer (50 mM PIPES at pH 7.0, 150 mM KCl, 5 mM CaCl2 and 5 mM MgCl2) in a sealed 384-well plate at 37 °C for 2 h. Twenty microliters of the reaction mixture were transferred into a clean well. Twenty microliters of the AlphaLISA assay mixture was transferred into the same well. The AlphaLISA mixture consists of 0.2 μg/mL of SM320 antibody, protein A donor beads (5 μg/mL) (PerkinElmer Life Sciences, USA) and Streptavidin acceptor beads (20 μg/mL) (PerkinElmer Life Scicences, USA). The plate was then sealed and shaken briefly to mix the reaction followed by overnight incubation. The signal was detected using Envision plate reader at 615 nm (PerkinElmer Life Sciences, USA). The signals generated were an arbitrary unit of gamma-secretase activity.
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