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5 protocols using bcl2 associated x (bax)

1

Quantitative Immunofluorescence Analysis of BRCA, Cell Cycle, and Apoptosis Markers

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FFPE tissue slides were double stained for BRCA1, BRCA2, p15, Bax and Tec (Abcam Inc., Cambridge MA) with Ubiquitin (Millipore, Temecula, CA). A second set of slides were stained for BRCA1, BRCA2, p15, Bax and Tec (Enzo Life Sciences, Farmingdale, NY) with Ubiquitin (Millipore, Temecula, CA). BRCA1, BRCA2, p15, Bax and Tec were detected using donkey anti rabbit Alexa Fluor 488 (Jackson Immuno Research Laboratories Inc. West Grove, PA). Ubiquitin was detected using donkey anti mouse Alexa Fluor 594 (Jackson Labs. West Grove, PA). All slides were stained with the nuclear stain DAPI (Molecular Probes, Eugene, OR). The fluorescence intensity of stained protein of interest was measured quantitatively using a 40× objective and a standard exposure time of 800ms using a Nikon 400 fluorescent microscope with three filters (FITC-green, Texas Red, and Tri-Color), and the Nikon morphometric system. The results were displayed as a graph attached to the immunofluorescent photography using a screen snip.
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2

Protein Expression Analysis in Cell Lysates

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Cells were collected and lysed in lysis buffer containing 10 mM Tris, pH 7.6, 150 mM NaCl, 5 mM EDTA and 1% TritonX100, 50 μg/ml pefabloc and 2 μg/ml aprotinin. Cell pellets were disrupted by 10 min sonication and lysates were obtained by centrifugation at 12,000 g for 30 min at 4°C. Equal amount of total proteins were resolved by SDS-PAGE and immunoblotted using antibodies against Mcl-1 (Santa Cruz, sc-819), Bcl-2 (Dako, M0887), Bcl-xL (Transduction Lab, 610209), Caspase-3 (Santa Cruz, sc-7272), Bax (Enzo Life Sciences, ADI-AAM-14-E) and Actin (Millipore, MAB 1501), used as a loading control. Quantification of bands was done using ImageJ software. The basal level of each cell line or patient was considered as 1.
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3

Protein Extraction and Western Blot Analysis

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RIPA reagent (Solarbio) and BCA kit (#23235, Thermo Fisher Scientific) were chosen to conduct protein extraction and concentration quantification, several times. The different proteins of every sample were separated using gel electrophoresis and then transferred onto polyvinylidene difluoride (PVDF, Bedford, MA, USA) membranes. Then, they were covered and maintained in 5% fat-free milk at room temperature for 2 h. The primary antibodies included Bax (No. ADI-AAM-140-E, Enzo Life Sciences, Inc., Farmingdale, NY, USA), Bcl-2 (No. ADI-AAM-072-E), TNF-α (No. LS-B6067, LifeSpan BioSciences, Seattle, WA, USA), IL-6 (No. LS-C746886), IL-1β (No. 503513, San Diego, CA, USA), p-IκBα (phospho Ser32/Ser36, No. GTX79042, GeneTex, Irvine, CA, USA), t-IκBα (No. GTX27545), p-p65 (phospho Ser468, No. GTX32256), t-p65 (No. GTX107678), and β-actin (No. GTX629630). After incubation with above primary antibodies at 4℃ overnight, secondary antibodies were used to block at room temperature for 1 h. Signals of protein were developed with an ECL™ Western Blotting Analysis system (Sigma). The intensity was analyzed by ImageJ software (version 146; National Institutes of Health, Bethesda, MD, USA).
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4

Apoptosis Regulator Modulation Protocol

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Venetoclax (ABT-199) and A1210477 were from Selleck Chemicals (Houston, TX, USA); S63845 from Chemietek (Indianapolis, USA).
The following antibodies were used: BCL2 (Dako, Cat.No.: M0887), BCLXL (Cell signaling, Cat.No.: 2764S), MCL1 (Santa Cruz Biotechnology, Cat.No.: sc-958), BAX (Enzo Life Sciences, Cat.No.: ADI-AAM-140), BAK (BD Biosciences, Cat.No.: AMO3), BIM (Millipore, Cat.No.:AB17003), NOXA (Enzo Life Sciences, Cat.No.: ALX-804-408-C100), CASPASE3 (Santa Cruz Biotechnology, Cat.No.: sc-7272), CASPASE9 (Santa Cruz Biotechnology, Cat.No.: sc-17784), cleaved CASPASE9 (Cell signaling, Cat.No.: 95015); ACTIN (Millipore, Cat.No.: MAB1501), GFP pAb (Abcam, Cat.No.: ab290).
Scramble, BCLXL, BAX, BAK and NOXA siRNAs were from Dharmacon. BIM siRNA from Santa Cruz Biotechnology.
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5

Western Blot Analysis of Apoptosis Proteins

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The analysis of protein expression was conducted by western blotting, as
previously described.20 (link) The
following primary antibodies were used: Mcl-1 (S19, Santa Cruz
Biotechnology, Santa Cruz, CA, USA), Bik (FL160, Santa Cruz Biotechnology),
Puma (Calbiochem, Merck, Darmstack, Germany), Bcl-xL, Bad, Bid,
Bak (BD Biosciences, Le Pont de Claix, France), Bcl-2, caspase 9, (Cell
Signalling, Saint Quentin en Yvelines, France), actin (Millipore Bioscience
Research Reagents, Merck, Saint-Quentin en Yvelines, France), Noxa (Alexis,
Paris, France) and Bax (Enzo Life Sciences, Villeurbanne, France). The
following secondary antibodies were used: rabbit anti-goat (Jakson
ImmunoResearch, West Baltimore Pike, PA, USA), anti-mouse/anti-rabbit
(Roche, Boulogne-Billancourt, France) and goat anti-rabbit (Jakson
ImmunoResearch).
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