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The SM0431 is a laboratory equipment product from Thermo Fisher Scientific. It is designed for use in scientific research and analysis applications. The core function of the SM0431 is to provide precise and reliable measurements, but a detailed description cannot be provided while maintaining an unbiased and factual approach.

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5 protocols using sm0431

1

Protein Electrophoresis Analysis Using SDS-PAGE

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For the electrophoretic assay, proteins from the analyzed preparations were sedimented with trichloroacetic acid at a final concentration of 10% or were used without sedimentation in the case of their subsequent staining with zinc67 (link). Protein residues were analyzed by electrophoresis68 (link) with 0.1% SDS in 12.5% PAG. Electrophoresis in stacking gel was run at 90 V; in separating gel, at 180 V. Protein bands in gels were revealed by staining with a solution of Coomassie Brilliant Blue R-250 (Serva, Germany) and imidazole–ZnCl2 solutions. As molecular weight markers, we used SM0431 (Thermo Fisher Scientific, USA): β-galactosidase (116 kDa), bovine serum albumin (66.2 kDa), ovalbumin (45 kDa), lactate dehydrogenase (35 kDa), restrictase Bsp981 (25 kDa), β-lactoglobulin (18.4 kDa) and lysozyme (14.4 kDa).
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2

Electrophoretic Characterization of Lysobacter OMVs

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For the electrophoretic assay, preparations of wild-type Lysobacter sp. XL1 OMVs and Lysobacter sp. XL1ΔalpB::tet OMVs were sedimented with trichloroacetic acid at a final concentration of 10%. Preparations of OMVs were equal and contained 0.04 mg of total proteins. Protein residues were analyzed by electrophoresis with 0.1% sodium dodecyl sulfate (SDS) in 12.5% polyacrylamide gel (PAG). Electrophoresis in stacking gel was run at 60 V; in separating gel, at 180 V. Protein bands in gels were revealed by staining with a solution of Coomassie Brilliant Blue R-250 (Serva, Germany). As molecular weight markers, we used SM0431 (Thermo Fisher Scientific, United States): β-galactosidase (116 kDa), bovine serum albumin (66.2 kDa), ovalbumin (45 kDa), lactate dehydrogenase (35 kDa), REase Bsp981 (25 kDa), β-lactoglobulin (18.4 kDa), and lysozyme (14.4 kDa).
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3

SDS-PAGE Protein Visualization Protocol

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The electrophoresis was conducted in 12% SDS-PAGE by the Laemmli method [43 (link)]. Proteins were visualized in gel using Coomassie Brilliant Blue R-250. SM0431 (Thermo Fisher Scientific, Waltham, MA, USA) was used as molecular weight markers.
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4

Recombinant PmrA Protein Purification

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After amplification using primers PmrAF and PmrAR, PCR products were inserted into pET-28a(+) digested with NdeI and HindIII to add a carboxyl terminal 6-his-tag. Plasmids were transformed into the expression strain E. coli BL21 (DE3) and cultured in LB medium (5 ml) at 37°C overnight. Cells were diluted 1:100 into 1 L LB broth containing ampicillin and cultured. When OD600 was between 0.4 and 0.5, recombinant PmrA was activated with 0.1 mM IPTG at 16°C for 20 h.
Mixtures were centrifuged at 7,000 × g for 20 min at 4°C and resuspended in lysis solution, followed by harvest of 6 L of cells and disruption by a One Shot Cell Disrupter (Constant Systems, Daventry, UK). To isolate insoluble substances, mixtures were passed through 0.45-μm syringe-end filters after centrifuging at 12,000 × g for 20 min at 4°C before loading on a His-tag column. Supernatants were transferred to a Ni-NTA affinity chromatography column (GE Healthcare, Pittsburgh, PA, USA). After balancing the column with lysis buffer, recombinant protein was added and eluted using washing buffer with an imidazole concentration gradient (0, 30, 60, 100, 200, and 500 mM). Washing buffer (30 ml) containing target recombinant proteins was dialyzed in 20 mM Tris-HCl, pH 8.0. Proteins were subjected to SDS-PAGE. Unstained and prestained protein markers (Fermentas, SM0431 and SM0671 Waltham, USA) were applied as references.
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5

Procurement of Analytical-Grade Chemicals

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All chemicals (analytical grade) used in
the present study were procured from Sigma-Aldrich or Merck unless
otherwise stated. The culture media were obtained from HiMedia and
Invitrogen. Protein molecular weight marker (SM-0431) was purchased
from MBI Fermentas.
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