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Skim milk

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Skim milk is a laboratory product used as a standard reference material or control sample in various analytical and testing procedures. It provides a consistent and reliable matrix for evaluating the performance of analytical methods and instruments. The core function of skim milk is to serve as a well-characterized, non-complex sample that can be used to validate and monitor the accuracy and precision of laboratory testing.

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50 protocols using skim milk

1

Apoptosis Pathway Protein Expression

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The cells at a concentration of 5 × 105cells/ml were seeded in 100 mm Petri dishes and incubated to attain confluence. The cellswere exposed to the inhibitory concentration of GAE (1.5 mg/ml) for 24 h. The cells without GAE treatment represented the control group. The medium was removed and the cells were washed twice with ice-cold PBS and lysed with RIPA buffer. The cell lysate was centrifuged (14,000 rpm, 10 min) and the supernatant was stored at − 20 °C till further use. The protein content of the cell lysate was quantified by Lowry’s method. 50 μg of protein was separated in 10% SDS- PAGE and the proteins were transferred onto a nitrocellulose membrane (BioRad, USA) and blocked with 5% skim milk (BioRad, USA). Following this, the membrane was exposed to primary antibodies (4 °C, 24 h) against Bax (1:500 Abcam, USA) ,Bcl-2(1:500 Abcam, USA), Bcl-XL (1:500 Abcam, USA), Caspase 3 (1:200 Abcam, USA), PI3K (1:500 Abcam, USA), p PI3k(1:1000 Abcam, USA), Akt(1:500 GenetexBio, USA), p Akt(1: 1000 GenetexBio, USA) and β actin (1:1000 1:1000 Abcam, USA). The membrane was then incubated with HRP-conjugated anti-mouse (1:2500) and anti-rabbit (1:2000) secondary antibodies for 1 h (RT) with continuous shaking. The protein bands were visualized using an ECL staining kit (Amersham Pharmacia Biotech, Sweden).
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2

SDS-PAGE and Western Blotting of Breast Tissue Proteins

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Breast tissue extracts were electrophoresed using 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and then electrotransferred to polyvinylidene fluoride (Solarbio) membranes. The membranes were sealed with 1X phosphate-buffered saline, 0.1% Tween-20, and 5% skim milk (Bio-Rad) and then incubated with primary antibodies at 4°C overnight. Membranes were then washed with 1X TBS-0.1% Tween-20 film and incubated with secondary antibodies at room temperature for 1 h. Autoradiography was performed with a Bio-Rad ChemiDoc XRS+ system.
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3

Western Blot Analysis of Cellular Proteins

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After washing with PBS, cells were lysed with the pre-chilled lysis buffer. Later, the collected cell lysates were subjected to 15 min of centrifugation at 14,000 × g and 4°C and boiling with 5 × sample buffer (BSA; Thermo Fisher Scientific, Inc., CA, United States) after the protein content was measured. Afterward, WB assay was performed on those protein samples. To carry out WB, the 4%–20% precasting gel (Bio-Rad Laboratories) was used to transfer protein onto the nitrocellulose membranes, and then 5% skim milk was utilized to block the membranes (Bio-Rad Laboratories) for 1 h under ambient temperature. Later, specific antibodies (dilution, 1:1,000), including anti-SLC17A9, anti-VEGF, anti-Bax, anti-Ki67, anti-MTA1, anti-Bcl-2, anti-MMP-2, and GAPDH (Santa Cruz, CA, United States), were used to block membranes. Subsequently, secondary antibodies (Santa Cruz) were utilized to incubate membranes at ambient temperature for 1 h, followed by visualization using the ECL solution (Bio-Rad Laboratories). Finally, images were taken using the chemiluminescence imaging system (Mini HD9; UVitec, Cambridge, United Kingdom).
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4

Western Blot Analysis of Whole-Cell Lysates

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For blots of whole-cell lysates, cells were lysed directly in GLB buffer (2% SDS, 10% glycerol and 50 mmol/L Tris, pH 6.8), boiled, and separated by electrophoresis on a 4%−12% SDS-PAGE gradient gel. Proteins were transferred to PVDF membrane (Millipore) and blocked in 5% skim milk (Bio-Rad) in 0.05% PBST. Rabbit monoclonal anti-AF1q, ICAM-1, and β-actin antibodies were purchased from Abcam. After the appropriate antibody incubations, an enhanced chemiluminescence (Denville) system was used for developing blots.
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5

Western Blot Analysis of Whole-Cell Lysates

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For blots of whole-cell lysates, cells were lysed directly in GLB buffer (2% SDS, 10% glycerol and 50 mmol/L Tris, pH 6.8), boiled, and separated by electrophoresis on a 4%−12% SDS-PAGE gradient gel. Proteins were transferred to PVDF membrane (Millipore) and blocked in 5% skim milk (Bio-Rad) in 0.05% PBST. Rabbit monoclonal anti-AF1q, ICAM-1, and β-actin antibodies were purchased from Abcam. After the appropriate antibody incubations, an enhanced chemiluminescence (Denville) system was used for developing blots.
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6

ELISA Protocol for Protein Antibody Detection

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ELISA platform and protocol was adopted from Charlesworth, et al.3 (link). Greater than 95% pure SpCas9 and SaCas9 proteins were provided by Integrated DNA Technologies (IDT). Tetanus toxoid was purchased from Astarte Biologics, and human hemoglobin and human albumin were purchased from Sigma-Aldrich. Protein antigens were coated onto a 96-well Maxisorp plate (Thermo Fisher Scientific) overnight at 4 °C in 1× bicarbonate buffer (Sigma-Aldrich). Plates were then blocked with 5% skim milk (BioRad) for 2 h at room temperature. Vitreous and serum samples were diluted 1:50 in 5% skim milk; plates were incubated overnight at 4 °C. Plates were then washed 3 × 5 min3 (link). HRP-conjugated goat anti-human Fc antibody (Bethyl Laboratories) was then applied at a dilution of 1:100,000 in 5% skim milk and incubated for 1 h at room temperature. 3,3’,5,5’-Tetramethylbenzidine substrate solution (Thermo Fisher Scientific) was then added and allowed to develop for 20 min before 1 N sulfuric acid (Thermo Fisher Scientific) was added to stop the reaction. The absorbance at 450 nm (A450) was then analyzed using a SpectraMax M3 microplate reader (Molecular Devices). ELISAs were performed in experimental triplicates and the mean average measurements from those three experiments are shown. Raw ELISA A450 values are available in the Source data excel file.
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7

Western Blot Analysis of Kidney Fibrosis

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The Western blot analysis was performed as described previously [20 (link)]. Kidney tissue and cell lysates were separated by 10% SDS-PAGE. After electrophoresis, the samples were transferred to PVDF membranes (BIO-RAD, Hercules, CA, USA) and blocked with 5% skim milk (BIO-RAD, Hercules, CA, USA). Then we probed the blots with primary antibodies to α-SMA (A2547 mouse; 1:1000; Sigma-Aldrich Merck KGaA, Darmstadt, Germany), type I collagen (1310-01; goat; 1:1000; Southern Biotech, Birmingham, AL, USA), ICAM-1 (sc-1511; goat; 1:1000, Santa Cruz Biotechnology, Mississauga, CA, USA), CTGF (sc-365970; mouse; 1:1000; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), phospho-Smad2 (3101; rabbit; 1:1000; Cell Signaling Technology Inc., Danvers, MA, USA), phospho-Smad3 (9520; rabbit; 1:1000; Cell Signaling Technology Inc.), Smad2/3 (07-408; rabbit; 1:1000; EMD Millipore, Billerica, MA, USA), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; AP0063; rabbit; 1:2000; Bioworld Technology, Inc., Danvers, MA, USA), which was used as an internal control. All signals were analyzed by a densitometric scanner (ImageQuant LAS 4000 Mini, GE Healthcare Life Sciences, Piscataway Township, NJ, USA).
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8

Western Blotting of Mitochondrial Proteins

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Proteins were transferred to 0.2 μm PVDF Trans-Blot Turbo membranes (Bio-Rad) using Trans-Blot Turbo (Bio-Rad). Membranes were blocked with 6% (w/v) skim milk (Bio-Rad) in PBST and incubated with primary antibody diluted 1:1000 in PBST + 3% (w/v) BSA overnight at 4°C. Membranes were probed with respective HRP-conjugated secondary antibodies (Bio-Rad 1706515 and 1706516) diluted 1:3000 in PBST + 6% (w/v) skim milk. Blots were detected using Pierce ECL Western Blotting substrate (Thermo) and iBright FL1000 Imager (Thermo). Band density was quantified using FIJI Gel Plugin (NIH). The following primary antibodies were used: rabbit anti-mouse TOM20 mAb (Cell Signaling 42406) and mouse anti-mouse β-actin mAb (Cell Signaling 4970).
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9

Western Blot Analysis of Receptor Signaling

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Cells were lysed with RIPA lysis buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 0.1% SDS, 1% NP-40, 0.5% sodium deoxycholate) supplemented by protease inhibitor cocktail (Roche) and phosphatase inhibitor cocktails (Calbiochem). Lysates were separated on 7.5% or 8% Tris-Glycine SDS-polyacrylamide gel and were transferred to PVDF membranes (Millipore). The membranes were blocked with 5% skim milk (Bio-Rad) dissolved in TBST buffer (50 mM Tris-HCl, 150 mM NaCl, 0.05% Tween-20). Then, the membranes were incubated with primary antibodies overnight at 4°C. Anti-EGFR antibody (#A300-388A) was purchased from Bethyl Laboratories. Anti-β-actin antibody (#A5441) and anti-γ-tubulin antibody (#A9044) were purchased from Sigma-Aldrich. All other antibodies including anti-phospho EGFR Y1068 (#3777), anti-phospho ERBB2 Y1221/1222 (#2243), anti-ERBB2 (#2165), anti-phospho SRC Y416 (#6943), anti-SRC (#2109), anti-phospho-ERK 1/2 T202/Y204 (#4370), anti-ERK 1/2 (#4695), anti-phospho AKT S473 (#4060), and anti-AKT (#9272) were purchased from Cell Signaling Technologies. Horseradish peroxidase-conjugated secondary antibodies (anti-rabbit: #31460, anti-mouse: #31430, Pierce) and SuperSignal West Pico Chemiluminescent Substrate (Pierce) were used to detect signals.
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10

RBD-mFc Binding Affinity Assay

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For validation of biological activity, the recombinant RBD-mFc and RBD proteins were coated on high-bind 96-well plates (Corning) at 4 μg/mL overnight at 4°C and blocked with PBS containing 3% skim milk (Bio-Rad) at 37°C for 1 hour. The plates were washed with PBST (PBS containing 0.05% Tween-20) three times and serially diluted hACE2-Fc was added and incubated at 37°C for another 1.5 hours. After five washes with PBST, HRP-conjugated goat anti-human IgG Fc antibody (1:5000, Abcam) was used as a secondary antibody. After 1 hour of incubation, the plates were washed with PBST five times. The binding was measured with the subsequent addition of the substrate diammonium 2,2-azinobis (3-ethylbenzothiazoline-6-sulfonate) (ABTS; Life), and the absorbance signal was read at 405 nm using a microplate reader (BioTek). The half-maximal effective concentration (EC50) was calculated using GraphPad Prism (version 8, GraphPad).
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