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45 protocols using nano glo luciferase assay substrate

1

Bioluminescence Imaging of Gene Expression

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Real-time BLI was performed using an In Vivo Imaging System (IVIS) Spectrum imager (PerkinElmer, USA) following the administration of furimazineNano-Glo Luciferase Assay substrate (Promega #N1120). For all in vitro BLI, cells were treated with 50 µM furimazine in Nano-Glo Luciferase Assay Buffer (Promega #N1120) for 5 min according to the manufacturer’s protocol. Then Bioluminescent images were captured with an open filter, binning set to 4. For in vivo BLI, animals were anesthetized with isoflurane prior to the subcutaneous injection of 250 µM furimazine (Promega #N1120; 1/20 dilution) into the calvaria defect site. Images were captured with an open filter, binning set to 4, and acquisition times of 60 s at the indicated settings. All BLI signal detected (both in vitro and in vivo) using the GpNLuc reporter represent BRET signal deriving from intramolecular energy transfer between NanoLuc and eGFP. Total flux (p/s) and average radiance (p/s/cm2/sr) were calculated using the Living Image software (PerkinElmer, USA).
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2

Compound 4 Luciferase Activity Assay

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Compound 4 was purchased from ChemDiv (San Diego, CA, USA). The NanoGlo Luciferase Assay Substrate was purchased from Promega (Madison, WI, USA), Polymyxin B nonapeptide (PMBN), dimethyl sulfoxide (DMSO), bovine serum albumin (BSA), Tween-20, phosphate-buffered saline (PBS) were purchased from Sigma-Aldrich (St. Louis, MO, USA). D(+)-glucose, D(+)-galactose, D(+)-raffinose, yeast nitrogen base without amino acids, Bacto peptone, Bacto yeast extract and the different amino acid complements were purchased from Formedium™ (Swaffham, Norfolk, England).
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3

Apoptosis and Necrosis Assay Protocol

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Digitonin, paclitaxel, calcium chloride, 0.4% trypan blue, dimethyl sulfoxide and 7-AAD were purchased from Sigma-Aldrich. Panobinostat and bortezomib were sourced from Selleckchem. rhTRAIL was purchased from Gibco and staurosporine obtained from LC Laboratories. The Alexa Fluor® 488 Annexin V/Dead Cell Apoptosis Kit was purchased from Thermo-Fisher. Caspase-Glo®-3/7 Assay, Digitonin solution and NanoGlo® Luciferase Assay Substrate were obtained from Promega. The pro-furimazine NanoBiT™ substrate (endurazine) and a novel asymmetric cyanine dye, Necrosis Detection Reagent, were synthesized and purified by Promega Biosciences, LLC.
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4

Phage-Decorated Magnetic Beads for Bacterial Capture

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Single colonies of E. coli (ECOR#13) were grown for 16–18 h in 10 mL of the total culture volume. Serial dilutions were performed in sterile PBS and cultures were enumerated using standard plate-counting techniques. Aliquots (100 μL) of 10−6 (3–4 log cfu/mL) and 10−8 (1–2 log cfu/mL) dilutions were placed in separate tubes and spiked with 2 μL of phage-decorated beads. A total of 100 μL of sterile PBS was used as a 0 cfu control. Other controls included 2 μL of free NRGp1738 at 5 log pfu/mL, 2 μL of unconjugated MNPs at 105 mL−1, and 2 μL of phage-decorated MNPs prepared as mentioned above but with click SOC replaced with additional assembly buffer. Samples were statically incubated for 15 min to allow phages to bind to bacteria and then moved to a magnetic rack and incubated for 15 min more to collect bacteria. The supernatant was aspirated and beads were resuspended in 100 μL of LB medium containing 7 log pfu/mL NRGp17 to ensure lysis of all captured cells. Resuspended samples were incubated with shaking for 6 h at 37 °C and then vacuumed through single wells of a 384-well filter plate. A total of 50 μL of the freshly prepared NanoGlo luciferase assay substrate (Promega, Madison, WI, USA) was added to each well and luminescence was read on the BioTek spectrophotometer.
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5

Monitoring Bacterial Lysis via Fluorescence and Luciferase Assays

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To monitor bacterial lysis during the bacterial peptide treatments, we transformed E. coli BL21 with reporter plasmids expressing codon-optimized eGFP and NanoLuc® Luciferase (Promega, Madison, WI, USA) genes under the control of the constitutive Pupp promoter. To monitor bacterial lysis using fluorescent microscopy, BL21 (pACYC184-GFP) cells were incubated with 10 µM of the antibacterial peptides, and microscopy was performed at time points 15, 30, and 60 min and at 4 h. All fluorescence images were taken at 488 nm excitation. The emission filter was 525/50 nM for cytoplasmic GFP. Phase-contrast images were also collected at the same time points. To monitor bacterial lysis in solutions by protein leakage, BL21 (pACYC184 nLuc) cells were washed with PBS (pH 7.4) three times, diluted with PBS to 105 cfu/ml, and then incubated with peptides for 15, 30, and 60 min. After incubation, the intact bacterial cells were precipitated and the luciferase activity of the supernatant was examined using the Nano-Glo® Luciferase Assay Substrate (Promega). The linearity of the assay was assessed using activity measurements of serial dilutions of the completely lysed BL21 (pACYC184 nLuc) bacterial culture. An undiluted bacterial culture was taken as 100%. Data were corrected to the background luciferase activity obtained with the supernatant of untreated cells.
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6

Planarian and 293T Luminescence Imaging

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The Leica DMi8 microscopy and Andor iKon-M 934 CCD camera were used to take pictures of luminescence from planarian cells and 293T cells with a 20x air objective (Leica, 506521). The 200,000 planarian live cells were resuspended in 50 μL culture medium and transferred to a glass-bottom dish (NEST, 801002) for imaging. The luminescence was measured after directly adding 1 μL Nano-Glo luciferase assay substrate (Promega, N1110) to cells. The exposure time was set to 20 s for luminescence imaging, and 1 s for bright field imaging.
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7

Noninvasive Bioluminescent-Fluorescent Imaging

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Bioluminescent-fluorescent BRET signal was quantified noninvasively as previously described [49] (link) with slight modifications. Briefly, animals were i.p. injected with 250 μM (1:20 dilution, ∼500 μg/kg) Nano-Glo Luciferase Assay Substrate (Promega, cat. #N1120) in sterile DPBS. Isoflurane-anesthetized (3%) animals were imaged using the AMI Optical Imager (Spectral Instruments Imaging, Inc.) 5 min after injection. Mice were imaged using the following camera settings: Exposure time= 5 min, Binning= Medium, F-stop= 1.2, Field of view= 25. Data were analyzed using the Aura software package (https://spectralinvivo.com/software/).
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8

Assaying Sonic Hedgehog Release

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SHH release assays were performed essentially as described (Tukachinsky et al., 2012 (link)). For blotting-based assays, confluent HEK293T cultures were washed three times with serum-free DMEM, and were then incubated for 24 h in DMEM. Conditioned media and cell lysates were analyzed by immunoblotting for SCUBE2, SHH, and other relevant species. For NanoLuc-based assays using purified release factors, HEK293T cells stably expressing SHH(NL5) were used (Petrov et al., 2020 (link)). After washing with DMEM without serum, the cells were treated with cycloheximide (100μg/mL) (Sigma) for 30 min prior to the addition of purified proteins. Aliquots of conditioned medium were collected at the indicated times, centrifuged to remove cellular debris, and NanoLuc luciferase activity was measured using Nano-Glo Luciferase Assay Substrate (Promega), according to the manufacturer’s instructions. In experiments testing the role of palmitoylation on SHH release, cells were first treated overnight with HHAT inhibitor RU-SKI 43 (Petrova et al., 2013 (link)) (Tocris Bioscience).
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9

Quantifying Nanoluciferase Expression in Huh7 Cells

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Transcripts (5 μg) of a Jc1 derivative expressing Nanoluciferase (JC1-NLuc) (Amako et al., 2015 ) were electroporated into Huh7 cells (see Supplementary). Compound was added as in Section 2.3. Cell viability was performed as in Section 2.5 following 4% paraformaldehyde fixation of cells. NanoLuc was measured using a BMG Labtech plate reader following addition of 50 μl PLB and addition of equal volume of NanoGlo Luciferase Assay Substrate (Promega).
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10

Production and Quantification of VLPs

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For production of VLPs, SH-SY5Y cells into which siRNA had been introduced were transfected with pCXSN-WNC, pCMV-WNV-prME, and pCMV-WNrep-NLuc(sec)2A. The culture supernatants were collected at 48 hpt and inoculated into Vero cells. After 48 h, the cells were treated with Nano Glo luciferase assay substrate (Promega) for 3 min and luminescence was measured using GloMax (Promega).
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