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5 protocols using phos 4ebp1

1

Western Blot Antibody Reagents for Protein Analysis

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Antibodies that were used for western blot analysis are: phos-TFEB (Calbiochem, ABE1971), TFEB (Bethyl, A303–673A), β-Actin (Sigma, A5441), GAPDH (Cell Signaling, 2118), p62 (Abnova, H00008878-M01), phos-s6-ribosomal protein (Cell Signaling, 4858), s6-ribosomal protein (Cell Signaling, 2217), phos-4EBP1 (Cell Signaling, 9451), 4EBP1 (Cell Signaling, 9452), phos-ERK (Cell Signaling, 9101), ERK (Cell Signaling, 9102), Lamin A/C (Cell Signaling, 2032), Lamp1 (DSHB, 1D4B), CYP2E1 (Abcam, ab28146), ALDH2 (Proteintech, 15310–1-AP). Anti-myeloperoxidase (MPO, # PP023AA) was from Biocare Medical. Antibodies for vacuolar ATPase H+ Transporting V1 Subunit A (V-ATP6V1a) and vacuolar ATPase H+ Transporting V1 Subunit B2 (V-ATP6V1b2) are kindly provided by Dr. Dennis Brown at Harvard Medical School. The Anti-LC3 antibody was generated as previously described (Ding, Li et al. 2010 (link)). HRP-conjugated secondary antibodies were from Jackson ImmunoResearch.
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2

Antibody Characterization for Cell Biology

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The antibodies used for this study were AMYLASE (A8273; Sigma-Aldrich), Atg5 (PM050, MBL, Woburn, MA), phos-TFEB (ABE1971; Millipore, Burlington, MA), TFEB (A303-673A; Bethyl Laboratories, Montgomery, TX), CK19 (TROMA-III, Developmental Studies Hybridoma Bank, Iowa City, IA), GAPDH (2118; Cell Signaling Technology, Danvers, MA), p62 (H00008878-M01; Abnova, Taipei, Taiwan), phos-4EBP1 (9451; Cell Signaling Technology), 4EBP1 (9452; Cell Signaling Technology), phos-MAPK (9101; Cell Signaling Technology), MAPK (9102; Cell Signaling Technology), phos-S6-ribosomal protein (4858; Cell Signaling Technology), S6-ribosomal protein (2217; Cell Signaling Technology), GFP (sc-9996; Santa Cruz Biotechnology, Dallas, TX), LAMIN A/C (2032; Cell Signaling Technology), LAMP1 (1D4B and H4A3; Developmental Studies Hybridoma Bank, Iowa City, IA), LAMP2 (ABL-93 and H4A4; Developmental Studies Hybridoma Bank), and PGC1α (PAB12061; Abnova). The TAP antibody was generated by Thomas Kolodecik from Yale University.45 (link) Antibodies for VATP6V1a and VATP6V1b2 are gifts from Dr. Dennis Brown from Harvard Medical School. The Anti-LC3 antibody was generated as previously described.43 (link) HRP-conjugated, FITC-conjugated and Rhodamine-conjugated secondary antibodies were from Jackson ImmunoResearch (West Grove, PA).
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3

Pharmacological Inhibition of mTOR Pathway

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AZD-8055 was purchased from MedChemExpress (Shanghai, China). Antibodies for western blotting against HPCAL1, ACSS2, RUVBL1, GAPDH, his tag and HA tag were obtained from Proteintech (Wuhan, China). Antibody against phos-mTOR, and phos-4EBP1 and phos-4EBP1 were purchased from Cell Signaling Technology (USA). SCD1 antibody was obtained from ABclonal (Wuhan, China). HPCAL1 antibody for IHC staining and anti-FLAG M2 gel was purchased form Sigma-Aldrich (USA).
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4

AMPK Signaling Modulation in Cancer Treatment

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Tamoxifen, Fulvestrant, methyl succinate, and spautin-1 were purchased from Sigma Aldrich. The following rabbit polyclonal Antibodies were obtained from Cell Signaling: AMPKα, AMPKα1, phos-AMPKα, phos-ACC, ACC, Phos-p70s6K, phos-s6, phos-4EBP1, cleaved PARP, cleaved caspase 3, and LC3B. ERα antibody purchased from Genetex. AMPKα2 antibody purchased from Millipore. siRNA against PRKAA2 was purchased from Dharmacon.
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5

Antibody Panel for Western Blot Analysis

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The following antibodies were used for western blot analysis: TFEB (Bethyl, A303-673A), β-Actin (Sigma, A5441), GAPDH (Cell Signaling, 2118), p62 (Abnova, H00008878-M01), GFP (Santa Cruz), phos-s6-ribosomal protein (Cell Signaling, 4858), phos-4EBP1 (Cell Signaling, 9451), s6-ribosomal protein (Cell Signaling, 2217), 4EBP1 (Cell Signaling, 9452), phos-ERK (Cell Signaling, 9101), ERK (Cell Signaling, 9102), anti-lymphocyte antigen B superfamily (Ly6B, AbD Serotec, MCA771G), Lamin A/C (Cell Signaling, 2032), Lamp1 (DSHB, 1D4B), TFE3 (Sigma, HPA023881), PGC1α (Abnova, PAB12061), mTOR (Cell Signaling, 2972). Antibodies for ATPase H+ Transporting V1 Subunit 1A (VATP6V1a) and ATPase H+ Transporting V1 Subunit 1B2 (VATP6V1b2) are gifts from Dr. Dennis Brown from Harvard Medical School. The Anti-LC3 antibody was generated as previously described5 (link). HRP-conjugated, FITC-conjugated and Cy3-conjugated secondary antibodies were from Jackson ImmunoResearch.
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